Haloferax mediterranei: HFX_2947
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Entry
HFX_2947 CDS
T02129
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hme
Haloferax mediterranei
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hme03032
]
HFX_2947 (topA)
03400 DNA repair and recombination proteins [BR:
hme03400
]
HFX_2947 (topA)
Enzymes [BR:
hme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HFX_2947 (topA)
DNA replication proteins [BR:
hme03032
]
Prokaryotic type
DNA Topoisomerases
HFX_2947 (topA)
DNA repair and recombination proteins [BR:
hme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HFX_2947 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Auto_anti-p27
NucS_N
Zn_ribbon_Top1
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AFK20611
UniProt:
I3R8Q1
LinkDB
All DBs
Position
complement(2857861..2858592)
Genome browser
AA seq
243 aa
AA seq
DB search
MESIRVFAGDCTVHFEGSRDRTQRGRVVVVVKPDRTVLVHDVSGYQPVAWLTRADSLTVE
SGPGSFGLVAHAGEQVLTVESNDVTGRAEYPASEAGIPVGSHPKTGEPLVRTNGAVVGLD
SGTEFRLPAGATVLDETCDDCGLPLMRTERGATFEVCIDRQCDPLDDRVKDRFDGEWSCP
DCDSPMRIIRRSGRLLAGCDAYPECETAFSVPAGVVVDDCECGLPVFETERGRRCLDSTC
EFA
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggaatctatccgcgtcttcgccggagactgtaccgtccacttcgaaggctcccgcgac
cgcacccagcgcggccgggtcgtcgtcgtcgtcaagcccgaccgaaccgtcctcgtccac
gacgtatccggttaccaacccgtcgcgtggctcacccgtgccgactcgctgaccgtcgaa
tccgggccggggtcgttcggtctcgtcgcccacgcgggcgagcaggttctcaccgtcgag
tccaacgacgtgaccggtcgtgccgagtaccctgcgagcgaggccggcatcccggtcggt
tcgcaccccaaaaccggtgagccgttagtccggacaaacggggccgtcgtcggcctcgac
tcgggaaccgagttccgactccccgccggtgcaaccgtcctcgacgagacgtgcgacgac
tgcggcctgcccctcatgcgcaccgagcgcggagcgacgttcgaggtctgtatcgaccgt
cagtgcgacccgctggacgaccgcgtgaaagaccgattcgacggggaatggtcctgtccc
gactgcgactcgccgatgcgaatcattcggcgaagtggtcgcctgctggccgggtgtgac
gcgtatcctgaatgcgagactgccttttcggtcccggcgggcgtggtcgtagacgactgc
gagtgcggcctgccggtgttcgagacggagcgcggccggcggtgtctcgactcgacgtgt
gagttcgcatga
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