Haloferax mediterranei: HFX_4102
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Entry
HFX_4102 CDS
T02129
Symbol
tfb9
Name
(GenBank) transcription initiation factor TFB
KO
K03124
transcription initiation factor TFIIB
Organism
hme
Haloferax mediterranei
Pathway
hme03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HFX_4102 (tfb9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hme03021
]
HFX_4102 (tfb9)
Transcription machinery [BR:
hme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HFX_4102 (tfb9)
Prokaryotic type
Archaeal type
TFB
HFX_4102 (tfb9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
DZR_2
HTH_24
TackOD1
RB_B
Motif
Other DBs
NCBI-ProteinID:
AFK20793
UniProt:
I3R983
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All DBs
Position
pHM100:complement(89571..90485)
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AA seq
304 aa
AA seq
DB search
MATRDIYTTSFDEDRPTDNTPCPECSGQVRTNSVETVCEDCGLVIDEQRIDHGPEWRTHD
QDQRKRTGAPLTAARHDRGLSTEIGRRKDANGNELSGQKRQRLSRMRREQNRGRFQSKAE
RNLAHGLGEVRRIASALELTDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASVHGACRCN
GHSRLLDDVVDRARIEQSRVANAYKTLNTELGLPTQPVRPSEFIPRLASELGISDAIRRR
AVVLSKHHQETAISNGCRPSGVAAACIYKAAQKHGRPLTQQRVADAAGMSAVTVRARRDE
LNAA
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgagagacatctacacgacgagcttcgacgaggatagaccgaccgacaacaca
ccgtgtcccgaatgcagcggccaagtaagaacgaacagcgttgaaactgtctgtgaagac
tgtggactcgttattgacgaacaacgaatcgaccacggtcctgaatggagaactcacgat
caggaccagcgaaagcggacgggcgctccactgactgcggcacgtcacgaccgagggttg
tcgacggaaatcggtcgcaggaaagatgcgaacggaaacgaactctctgggcaaaagcgc
cagcgactgtcccgaatgcgccgggaacagaatcgtggtcggttccagtcgaaagccgag
cgaaacctcgcacacgggctgggcgaagtacgaagaatcgccagcgccctcgagcttaca
gattcggtccgtgaccaggcgtgtcagctgttccggagcgctcagaacgaagacctgctt
cgaggccgatcaatcgaagcgattgcggcagcaagcgtccacggggcctgtcgctgtaac
ggccactcgcggttactcgacgacgtcgtcgacagagcacgcatcgaacaatcgagagtc
gcgaatgcgtacaagacgctgaatacagaacttgggctcccgactcagccggttcgcccg
agtgaattcatcccccgtctcgcgtcagaacttggcatttcagacgccatccggcgtcga
gcagtggtactctcgaagcaccatcaagaaactgctatttcaaacgggtgtcgtccgagt
ggcgtcgcggcggcctgcatatacaaagctgcacagaaacacggaaggccactcacacag
cagagagttgcggatgctgcagggatgtcagctgtaacagttcgtgcccggagagacgaa
ctcaacgcggcgtga
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