Haloferax mediterranei: HFX_5177
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Entry
HFX_5177 CDS
T02129
Symbol
tfb10
Name
(GenBank) transcription initiation factor TFB
KO
K03124
transcription initiation factor TFIIB
Organism
hme
Haloferax mediterranei
Pathway
hme03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HFX_5177 (tfb10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hme03021
]
HFX_5177 (tfb10)
Transcription machinery [BR:
hme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HFX_5177 (tfb10)
Prokaryotic type
Archaeal type
TFB
HFX_5177 (tfb10)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Cyclin_C
Zn_Ribbon_TF
Sigma70_r4
HTH_24
HTH_AsnC-type
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AFK21011
UniProt:
I3R9V1
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All DBs
Position
pHM300:194002..195012
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AA seq
336 aa
AA seq
DB search
MSDSTSTPWRIATNETEAAGDGNTQESTTGNGPKALDKDELVYDERHGEWVDPETGEVVR
EGEIDRGPEWRAFDSAERDQKSRVGSPTTNLMHDSGLSTNIGWQDRDAYGNSLSTRQRQK
MKRLRTWNERYRTRDSKERNLKQALGEVERMGSALGLPDTVRETASVIYRRALQDDLLPG
RSIEGVATAAIYAAARQAGVPRSLDEVQHVSRVEKMELTRTYRYISRELNLDIQPADPEQ
YLPRFVSDLGTTDEVERRARSLLQNGKQDGLHSGKSPVGLAAAAIYAGALLADEEITQEE
VSEVTDISEVTIRNRYRELLKARHDRREERRANAAV
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcaacttctaccccgtggcggatagcgacgaacgaaactgaagcggccggc
gacggtaacacacaggaatctacgacgggaaacggcccgaaagctctcgacaaggacgaa
ctcgtatacgacgaacgacacggcgagtgggtcgatcccgagactggagaggttgtacga
gaaggcgagattgaccgcggtccggagtggcgagcgttcgattccgcagagcgcgaccag
aaatctcgcgtcgggtcgccgacgacgaacctgatgcacgacagcgggctctcgacgaat
atcggctggcaggacagagacgcgtacggcaactccctttcgactcgccagcgtcagaag
atgaagcgtctgcgtacgtggaacgaacgatatcgtactcgcgactcaaaagagcggaac
ctcaagcaagcactcggcgaagtcgaacgaatggggtcggcactcggcctcccggatacc
gtccgcgagacggcgagtgtgatatatcgtcgggcgcttcaggatgacctccttcccggt
cgctccatcgaaggtgtcgccacggccgcaatctacgccgccgcacggcaagctggggtt
ccgcggtcgctcgacgaggttcaacacgtctcccgcgttgagaaaatggaactcacgcga
acgtaccggtatatctcacgagagctaaacctcgatatccagccggcagacccggaacag
taccttccgcggttcgtctctgacctcggcacgacggacgaagtcgaacggcgtgcacgc
tcactgctccagaacgggaagcaagacggactccatagcggcaaaagccctgtgggtctc
gcggccgcagctatctacgctggcgcgctgttagccgacgaagagataactcaggaagaa
gtgagcgaagtaaccgacatcagcgaagtgacgattagaaaccgctatcgcgaactcctc
aaagcgagacacgaccgccgagaggaaagacgcgcaaatgccgctgtctaa
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