Hydra vulgaris (swiftwater hydra): 100190918
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Entry
100190918 CDS
T01080
Symbol
rfc1
Name
(RefSeq) replication factor C large subunit
KO
K10754
replication factor C subunit 1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03030
DNA replication
hmg03410
Base excision repair
hmg03420
Nucleotide excision repair
hmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100190918 (rfc1)
03410 Base excision repair
100190918 (rfc1)
03420 Nucleotide excision repair
100190918 (rfc1)
03430 Mismatch repair
100190918 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmg03032
]
100190918 (rfc1)
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100190918 (rfc1)
DNA replication proteins [BR:
hmg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100190918 (rfc1)
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100190918 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_30
AAA_7
AAA_22
RuvB_N
AAA_14
RNA_helicase
AAA_17
BRCT_2
AAA_5
nSTAND3
AAA_16
AAA_33
AAA_18
NTPase_1
AAA_19
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
100190918
NCBI-ProteinID:
NP_001267861
UniProt:
B6DQM4
LinkDB
All DBs
Position
12:complement(39328507..39377832)
Genome browser
AA seq
1116 aa
AA seq
DB search
MADIRSFFSSNKNKIQKKSSSNSVIDLANDSKNNSTAKEEKPNSNGMKKLGKKRKVLVIE
SDSDEEPLPSKFRKGKSLKESDTKKYTPEKPQINKEIKLKEVSVQFPPKENVQSSNTKKP
KIQELLEKKELRPITAEDFFSGTLSVTSNKSLDDKKEKKNTPDVILPTPVKEPIKSQNKK
NKLLTNIKEKDLDTNEREDTKQDVPEIKMKEAVSKYFTEAIKSDASNNKQKLNLDVSLKE
KNKHKLKPDVISQSQYVMSSPKKTVKQKIEPDVTSPPNKIVEQKIEPYVASPSNKTVKQK
IDSDVTSPPNKKVKAEKTETKPIETNTPVEKKKSYWAYKHRDGPSALGSKELPKGSDNCL
AGLSFVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGETKIEKALKHKT
KQIDEDGFIDLICSHSKKPNELNNNDHNENLKSREKSFSDSSKRTPILDVNSPTLKKKGV
LETGKLDVLTSNSTSMVQNVQSPKDKPNLSQISPAISNTPQTQSPLYNSQDCTNGKTSSL
LWVDKYKPATMRNIVGQQGDKSNANKLYKWLLKWNENNSSGEKKKNFYSGKEDGSIFKAA
LLSGPPGVGKTTTANLVCQELGFSFIEMNASDTRGKKALETIIKDALSNKTVAGVMQGNT
GDKHALIMDEVDGMAGTEDRGGMQELIQLIKKTKIPIICMCNDRNHPKVRSLSNYCFDLR
FYKPRVEQIKGFAMSVAAREGFKIQPQAMEQIVVGANQDIRQVLHNLQMWNSTKSVLNYD
EAKSNANDASKNIKLGPFDIVKQLYTANDCSKMSYNEITDLFFMDYSFIPLFMQENYLYT
NPAKARGNPRVTLDLISETADSFSDSDLVDVLIRGEQSWSLLPLQGLFSTVIPCVKMAGY
IGQRIEFPRWLGKNSSMNKNHRILQELKMHMSLSAHCLKSEVNTDYIPVLKKRLTDPLLD
SSLDSSAAAKLVISTLNDYNLLREDWDSILEISKWGEEPDIASKIPSKVKSAFTRLYNKE
THKIPYTLHQAPKKIKGASQENVLEDDDEDIENEDIENEEEDSEDIKKDAMILIKKEPVS
KVSGKEKRAAVTSTDSKKKPSSKKSASSSKKGKLKK
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggctgatattcgatcattcttctcatcgaacaaaaacaaaatacagaaaaagtcaagt
agcaattcagttattgatttggcaaatgattcaaaaaacaattcaacagcgaaggaagaa
aaacctaacagcaatggtatgaaaaagctaggtaaaaagagaaaggttttagtaatagaa
tcagattctgatgaagagccattaccatccaagttcaggaaaggaaaatctttaaaagaa
tcagacacaaaaaagtatacaccagaaaaaccgcaaataaataaagaaattaagcttaaa
gaagtttcagttcaatttccaccaaaagaaaatgttcaaagttctaatacaaagaagcct
aaaatacaagaattgcttgagaagaaagagttgcgtccaataactgcggaagatttcttt
tctggaactctttctgtgacaagtaataaaagccttgatgataaaaaggaaaaaaagaat
acacctgatgttatccttccaacaccagtaaaagagccaatcaaatctcaaaacaaaaaa
aacaagcttttgactaatataaaagaaaaagatttggatacaaatgaaagagaagacacc
aagcaagatgttcctgagattaaaatgaaagaagctgtcagtaaatactttactgaagcc
attaagtcagatgcgtcaaataataaacaaaaactaaatcttgatgtatctttgaaagaa
aaaaataaacataaattaaaacctgatgttatatctcagagtcaatatgttatgtcttct
ccaaaaaaaactgttaaacaaaagattgagcctgatgttacatctcctccaaataaaatt
gttgaacagaaaatagagccttatgttgcgtctccctcaaacaaaactgttaagcaaaag
attgattctgatgttacatctcctccaaataaaaaagtaaaagcagaaaaaacagaaact
aaacctatagaaaccaatacaccagttgaaaagaaaaaaagttactgggcatacaaacat
agagatggtccttcagctcttggctccaaagaactgcctaagggaagcgataactgctta
gcaggattatcctttgtaattactggtgttcttgaagcatttgatcgagatgagattgca
gattcaataaagcgttatggtggaaaagttactacgagtgttagtggaaaaactagttat
attattgttggcagagatcctggggaaactaaaattgagaaggctctcaagcataaaacc
aaacagattgatgaggatggttttatagacctaatttgttctcattcaaaaaagcctaac
gaactaaacaataatgaccataatgagaatcttaaatcaagagagaaatcattttctgat
agttcgaaaagaacacctattttagatgtaaatagtcctacattaaaaaagaaaggagtt
ttggaaactggcaaacttgatgttttaacttctaattcaacttctatggttcaaaatgtt
caatcacctaaagacaaacctaatctatcgcaaattagtccagctatttcaaacacccct
caaacacaatcccctctttataactctcaagattgcaccaatggtaaaacttcttcttta
ctctgggttgacaaatataaacctgcaaccatgcggaatattgttggtcaacaaggtgac
aaaagcaatgccaacaaactctataaatggttgctcaaatggaatgaaaacaattcatct
ggtgaaaaaaagaaaaatttttattctggaaaagaggatggttccatctttaaagctgct
ttattatctggacctccaggtgttgggaagactacaactgctaaccttgtttgccaagaa
cttggtttttcattcattgaaatgaatgctagtgatactagagggaaaaaagctctggaa
acaattataaaagatgcactttctaacaaaactgtagcaggagttatgcaaggtaatact
ggagataaacatgctttaatcatggatgaagttgatggtatggctggaacagaagacagg
ggaggaatgcaggaacttattcaactcataaaaaaaacaaaaatcccaatcatatgcatg
tgcaatgatcgtaatcatccaaaagttcgaagtctttcaaattactgcttcgatctgcgt
ttttataagccacgtgttgaacaaatcaaaggttttgcaatgagtgtagcagcacgtgaa
ggttttaaaattcaacctcaagctatggagcaaattgttgttggtgcaaaccaagatata
agacaagttttgcataatttgcaaatgtggaacagtacaaaaagtgtcttaaattatgat
gaagcaaaatctaatgcgaatgatgcaagcaaaaatataaaattgggaccatttgatatt
gtgaaacagttgtatacagctaatgactgctcaaagatgtcttataatgaaattactgat
ctattcttcatggattattcttttatacccttgtttatgcaggaaaactatttgtatacc
aaccctgctaaagcaagagggaatcctcgtgttacacttgatttaataagtgaaacggct
gattcattttcggatagtgatttggtagatgttttaatccgaggagaacaaagttggtct
ttacttcctcttcaagggttattttcaacagttattccttgtgtcaaaatggctggttat
atcggacaacgaattgaatttcctagatggttgggaaaaaattcttctatgaacaagaac
catcgtattttgcaagaactgaaaatgcacatgtctttaagcgctcattgtttgaaatct
gaggtaaacaccgactatattcctgttctaaagaagcgactaaccgatccattacttgat
tctagcttggactcctctgctgctgctaaactagttatttcaacactgaatgattataat
cttttaagagaggattgggattcaattctagaaatcagtaaatggggagaagaacctgat
attgcctcaaaaatccctagcaaagtcaaatcagcatttactcggctatataataaagaa
acacacaagattccttacactcttcaccaagctcctaaaaaaattaaaggtgcgagccaa
gaaaatgttctcgaggatgatgatgaagatatagaaaatgaagatatagaaaatgaagaa
gaggatagcgaggatattaaaaaagacgcaatgattttgattaaaaaagaaccagtctca
aaagtttccggaaaagaaaaacgagctgctgttactagcacagatagtaaaaaaaaacca
tcttcgaagaaatctgcatcatcttcaaaaaaaggaaaattaaaaaaataa
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