Hydra vulgaris (swiftwater hydra): 100192301
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Entry
100192301 CDS
T01080
Name
(RefSeq) putative ATP-dependent RNA helicase Pl10
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100192301
03041 Spliceosome [BR:
hmg03041
]
100192301
03036 Chromosome and associated proteins [BR:
hmg03036
]
100192301
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100192301
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100192301
mRNA cycle factors
Common to processing body (P body) and stress granule
100192301
Spliceosome [BR:
hmg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100192301
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100192301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100192301
NCBI-ProteinID:
XP_047130892
LinkDB
All DBs
Position
4:39525563..39544886
Genome browser
AA seq
660 aa
AA seq
DB search
MSHVVQNDVHGLGQRVAGLDLNKQSNQQGSRYIPPHLRGQQQVGPAGPQKNIIPQYFENP
SRGGYQQNFNRGGGGGYNSQYQHQNYNGYSKNTSYNGNQSNRGEQFLWNSERGSRWETND
ALSNADWSKLLPRNERLEMELFTSAQSGINFDKYEDIPVEATGSNTPKSIETFDEANLGE
IILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPILSRIFEEGPFE
NPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGGADVSTQMRD
IDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQIREIVEKCDMPR
TGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKREFLL
DLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQREREQALASFRVG
TTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGHTGLATSFFNDKNR
NVARDLMDILAEAKQEIPSWLESMGYQAQQHQAAKKAQKTNRYGGGGGGFGGRDYRQFSG
NRGGAVGGGSNYYQAPQHVGNPYQPSYQPTYNHQPAYQQNNYRGTGGRAHSNNSDDWWEK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtcgtacaaaatgatgttcatggtctagggcaacgagttgctggtctggac
ttgaacaagcaaagcaatcaacaaggttcgcgttacataccacctcatcttcgtggtcaa
caacaagttggtccagcaggtcctcaaaaaaatattattcctcaatattttgaaaaccct
tcccgaggtggatatcagcaaaattttaaccgaggtggaggtggagggtataacagtcaa
tatcagcaccaaaactataatggttatagcaaaaacacaagctataatggaaatcaatct
aatcgaggagagcaattcctgtggaactctgagcgaggctctcgctgggaaacaaatgat
gcattgtctaatgcagactggtccaagttgttgccaagaaatgaaagacttgagatggag
ttgtttacatcagcacaatcaggtataaattttgacaagtatgaagatatccctgtagaa
gctactggaagcaacactccaaagagcatagagacatttgatgaagcaaatcttggagaa
attattctcactaacatatcattagcacattataccaaaccaactcctgttcaaaagaat
tctattccaattattaaagcaaaaagagatctgatggcatgtgctcaaacaggatctgga
aaaacagcagctttcttagtaccaattctcagtcgaatatttgaagaaggaccatttgaa
aatccttcaaatgttcgtcaaggtggcaaaaagaagcagtatccaattgcattagtttta
gctcctacaagagagctagcatcccaaatatatgatgaatccagaaaatttgtatatcgc
tcgtgcatacgcccatgtgttgtttatggtggagctgatgtaagcactcaaatgcgtgat
attgatcgtgggtgccatttgctagtagcgaccccaggtcgtttagtagacatgattcag
cgtggaaaagttggtcttgaatgtattaagtttcttgtattagatgaagctgatagaatg
ctagacatgggatttgaaccacaaataagagaaattgttgagaaatgtgacatgccaaga
actggtgaacgacaaactctgatgtttagtgctacttttcctaaagaaattcagatgtta
gccagagatttcttggataattatatatttttggctgttggtcgtgttggttcaaccagc
gaaaatattacacaaaaggtggtttgggttgaggaacatgataaaagagaatttttactt
gatttactaaatgcttcaggaccagactctcttactttggtttttgttgaaactaaacgt
ggagcagatgctttagaacagtttttatttcgatgcccagaaaactatcatgctacttca
attcatggagaccgtcatcaaagagaaagagagcaggctcttgcttcctttagagtgggt
acaacacctattttagtggctactgctgtggctgccagaggcttggatattccaaatgta
aagcatgtgatcaattttgacatgcctagtgatattgaagaatatgttcatcgaattggt
cgaactggtcgtgttggacatacaggtctagctacttctttttttaatgataaaaatcgc
aatgttgctcgcgatttaatggatattttggctgaggctaaacaagaaataccttcttgg
ttagagtcaatgggttatcaagctcagcaacatcaagctgctaaaaaggcacaaaagaca
aatagatatggcggaggtggtggtggttttgggggacgcgattatcggcagtttagtgga
aatcgtggtggggcagttggtggtggaagtaattattatcaggctcctcaacatgttggc
aatccttatcaaccttcttaccagcctacatataatcaccagcctgcttaccaacaaaat
aattatcgtggtactggaggacgtgctcatagcaataacagtgatgattggtgggaaaaa
tag
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