Hydra vulgaris (swiftwater hydra): 100197170
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Entry
100197170 CDS
T01080
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03013
Nucleocytoplasmic transport
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100197170
03015 mRNA surveillance pathway
100197170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100197170
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100197170
mRNA cycle factors
P-body specific factors
100197170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
KH_PARP14_1
Motif
Other DBs
NCBI-GeneID:
100197170
NCBI-ProteinID:
XP_047122629
LinkDB
All DBs
Position
13:complement(23294321..23376429)
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AA seq
1193 aa
AA seq
DB search
MKPVERSHRYSSERKNKSLLLDESDSRSESEIGEQIVQSGDENSNEADTYPNTNGDDMLK
NEELKMALETQAYNEQRIEKRLELREKNLNAQGNRPDELFLKKLDSSMKKNTTFIKKLRS
INEQQKNALVNEFNGLNLSKFIQEAVTAMVEAKLKVSDVNAAAYMCSLFHQRYADFTVLF
KQNFLKVFDCIGEGCKDEEKAAVVAKLRPALRLLGELVLDGFYLLNEGIPILLTILQNIL
NADKASFTCGTVVITLVRHCGEDLAGILPRKQRHWKETTNMSFSTLGVLSADQQSVFMCL
FKEYYENISNHLVKLHKELQNREKQNRQTIGLRGELPADRKESFEKAQKIYEKILSSTTS
LAELLDEEMPELPECQFEEREDVGTINIFTPNRGVEYDSETGLWEDDDTRTFYEDIKDLK
ILVPQIVFKEQDVPSNAQRKEKLMKDKKKKERRLRVDLLADDGAEYNDEIDDPDDSYEQD
ILGEDADDEDPATLGMAAIADAYFNKLPTCINRDFIDQAAEEFILKLNTKGNRKRLVKTL
FSVNRTRLDLLPFYARLVSTLAPCLVDIAPDLVWLLKGSFLSHLRKKDQIHSESKIKTVR
FIGELTKFKVCPKAEALYCLKVLLDKFTHHNIDMACNLIETCGRFLYRSPESHSRMSSLL
EQMMRKKAVQAFDTRHSTMIENAFYYCNPPERQKLNKKVREPIHEYIRKLVYKDLFKTTT
EKVLRQIRKLPWNDSKIVAYVARCLTNIWNVKFNNIRCVANMLSGLAEYHEDLAICIIDG
TLENIRLGMETNIFRDNQRRICCMKYLGEMYNYQLVDSDIIFNTLYMLITFGSCLDMAAS
ELDPPENLFRIRLVCTLLDTCGQYFDRGSSKKKLDYFLIFFQCYIWQKKESDCWNEQCPF
PKEVEYMVHDTFESLRPSLKLFTSLEDAKQAAEELNKEFQNKFCEVEKNSQDNFSNTSSL
SSPMQDSPQAFSFAASQSSQEEEDRYEGEDEYENKEDDNNFSGSENDEMFTMDNVEQVVL
LEKPKLYQCEEDDFFCKQFERMIGESVTERLQDNMVTPNLDIAIPMNLKGKHKKMRNNAE
EPVEHPQSINFVMMLKKNNKQILKDLPIPITSDLAANMHDKQKAKQAEHEEMKRLVLDYN
QRQEEESLNEIMAHSKPIKRASQIRPFSAKGMNSTQNRIRDTEQQFFGSSSRR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaagccagtagaacgctctcatagatacagttctgagcgcaaaaataaaagcttgttg
ttagatgaatcagattcaaggtcagagagcgaaattggagagcagatagtgcaaagtggt
gatgaaaattcaaatgaagcagacacttatccaaacactaatggcgatgatatgttgaaa
aatgaagaattgaaaatggcattagaaactcaagcatacaatgaacaaagaatagaaaag
cgcttagagctaagagaaaaaaacttgaatgcacaagggaatcgaccagatgaattgttt
ttaaagaaattggattcctcaatgaaaaaaaatactacatttattaaaaaactacgctcc
ataaatgaacaacagaaaaatgctttagtaaatgagtttaatggattaaatttaagtaag
tttattcaagaggctgttacagctatggttgaagcaaaattaaaggtttctgatgtcaat
gctgctgcttacatgtgttctctttttcaccaacgttatgctgatttcacagttcttttc
aaacaaaactttttaaaagtgtttgactgtataggagagggatgcaaggatgaagaaaaa
gctgcagttgtagcaaaactgcgtccagccttgcgtttacttggagagttggttttagat
ggtttttatttacttaatgaaggcattccgattttacttactatcttgcagaacatactt
aatgcagacaaggcttcatttacttgtggaacagttgttatcactttagtgcgtcattgt
ggagaagatttggctggaatattaccaaggaagcaacgccattggaaagaaacaacaaac
atgagtttttctactttaggagtactatcagctgatcaacaatctgttttcatgtgcttg
tttaaagaatactatgaaaatattagcaatcatttagtaaagctacacaaggagctgcaa
aacagagaaaaacaaaacagacaaactattggcttgagaggagaacttcctgccgatcgt
aaggaatcatttgagaaggctcaaaagatttatgaaaagattctttcttcaactacatcg
ttagcggagcttctagatgaagagatgccagaacttccagaatgtcaatttgaggagcgt
gaagatgttggtaccattaatatattcactccaaatcgcggtgtagagtatgattctgag
acgggtttgtgggaagatgatgatacaagaactttttatgaagatataaaagacttaaaa
attcttgttccacagattgtattcaaagagcaagatgttccttcaaatgcgcagcggaaa
gaaaaacttatgaaagacaagaaaaagaaagaaagaagattaagagtcgacttactagca
gatgatggagctgaatacaatgatgaaattgatgatccagatgattcttatgagcaagat
attcttggagaagatgctgatgatgaggatcctgctactctaggaatggctgcaatagct
gatgcatattttaataagttacccacttgtattaatagagatttcattgatcaggctgca
gaagaatttatattaaagttaaacacaaaaggaaacagaaagagactagtaaagacactg
tttagtgttaacagaacaaggttagacttgttgccattttatgctagattggtatctaca
ttagccccatgtctcgttgatattgcacctgatttagtttggttgttgaaaggcagtttt
ctttctcatcttcgtaagaaagatcaaatacattctgaatcaaaaattaaaactgtaaga
tttataggtgagttaacaaaattcaaggtgtgtccaaaagctgaagcactttattgtttg
aaggtactcttggacaagtttacacatcataatattgatatggcatgcaatttgattgaa
acttgtggacgatttttatatcgatcacctgaatctcattctaggatgtcaagtttacta
gaacaaatgatgcgtaagaaagctgtgcaagcttttgatacacgacattctaccatgata
gagaatgcattctattattgtaatccacctgaaaggcaaaagctgaataagaaagtgcga
gaacccatccatgaatatattcgtaaacttgtgtataaagacctttttaaaacaactaca
gagaaagttttacggcagattagaaagttaccttggaatgatagtaagatagttgcgtat
gttgcaagatgtctaacaaatatttggaatgtaaagtttaacaatattagatgtgttgct
aatatgttgtctggactagcagaatatcatgaagatttagctatatgcattattgatgga
actttagaaaacattaggcttggtatggagactaacatatttcgagataaccagcgaaga
atatgttgtatgaagtatcttggagaaatgtataactatcaattagttgatagtgacatt
atttttaacacattgtacatgttaataacattcggcagttgcttagatatggcagcatca
gaactggatcctcctgagaacttgtttcgcattcgtcttgtttgcactttgttagatacc
tgtggccaatattttgatcgtggatcatccaaaaaaaagcttgactactttttaattttt
ttccagtgttacatctggcaaaaaaaagaaagcgactgctggaatgaacagtgccctttt
cctaaagaagttgagtatatggtacatgatacctttgaaagtttgaggccttctttaaaa
ttgtttacttcattagaagatgcaaaacaagcagctgaagagttgaataaagaatttcag
aataaattttgtgaagttgaaaagaatagtcaagataacttttcaaatacttcttcctta
tctagtccaatgcaagattctccgcaggctttttcttttgctgcatctcaatcttctcaa
gaagaagaggatagatatgaaggagaagatgaatatgaaaataaagaagatgataataat
ttttctggtagtgaaaatgatgaaatgtttaccatggataatgttgaacaggttgtttta
cttgagaagcctaaactctaccaatgtgaagaggatgacttcttttgcaagcagtttgaa
cgtatgattggggaaagtgtcacagagcgattgcaagataatatggttacaccaaatttg
gacattgccattccgatgaacttaaaaggtaagcataagaagatgagaaataatgctgaa
gagcctgttgaacatccacagtcaattaattttgttatgatgttaaaaaagaataataaa
caaattctgaaagatttacccattccaataacatctgatcttgctgctaatatgcatgat
aaacaaaaagcaaagcaagctgaacatgaagagatgaagagacttgtgctggattataac
caaagacaagaagaggaatctttaaatgaaattatggctcactcaaaaccaataaagcga
gcttcacagattcgtcctttttctgcaaaaggtatgaattcaacccaaaatcgaattcgt
gatactgaacaacagttttttggctcttcttcaaggcgttaa
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