Hydra vulgaris (swiftwater hydra): 100197273
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Entry
100197273 CDS
T01080
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100197273
03041 Spliceosome [BR:
hmg03041
]
100197273
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100197273
Spliceosome [BR:
hmg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
100197273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_5
RRM_3
Nup35_RRM_2
TPD52
Motif
Other DBs
NCBI-GeneID:
100197273
NCBI-ProteinID:
XP_047128663
LinkDB
All DBs
Position
3:28941223..29011505
Genome browser
AA seq
1314 aa
AA seq
DB search
MGGDMELVRQFNNELSSICESKPPVSKAKMASITRLAVKALKHYKHIVHSVEKFLQKCRP
EYKIAALYVLDSIIRQSRHQFGPDKDLFGPRFQKNLKFLFQNIFQCPQEDKPKVVRVLNL
WQKNTIYSPEVISPLIDMASTPSKVLAAAVQRHKSAKAAHNQSLNNENFDDPFEDDDNGE
CKGGVQMSQEDEIKVLKAQLEQQKKHQELLQQQLQMQVLATRQQNLQFQLQQSQQNLLPS
TALSLPQQVTPLNPLLNQALNPQLNQALNPQLSILSHIHDLTLQLEKDKATLALLASSED
SVQPNSKQAAESQFLENFQQLIQTAKGFIQKDPRQHSDIGKSSEDNTINKQQSAQQLSQP
LTLQSTQQSILQLPPQPVHQLPQQPVNQLPQQPIHQVTQQPVHQLSQQPAPFDEDDENKK
ARKYHHGEDLQSSITAAQPKIREEHYSVNEGPPKKKPLIDLYEDQLRKKNYEEDDDAMQI
DNDDEIHLNESKQHGSRWQPFTEQVQHNQESPKNHGRIESRIENNTRLLLEHRNNMPPPK
KNRVTVASITVWVGRLPKNLSIDVVHDAFQQYGEIKSIDYIEARGCAFVTMKSRVEAERA
LRHLKNKRIGGYDVKMEWGQAKGLQPYSKFWDESFGCAYIPCDLVNEQELSSLLEGSIID
EVTLPVGLTLPNDNEEFFESSTETSIPSDMSVPRPFIMPPGPLPLPGMGLPGPGFRGQYP
PLHQMLPMPFRPPPQHMIPMQGGGPHINNNPNFHVHDDMPRDPRDLLKQIHPQFQPGMSS
HSSMQHCDFGNRPPFHGRPPVPPGEPQRHHMPMAGERFGSQLLPGERPPFERHWFTPENR
FNSPRFPQEQPLNSRNFNMHISEQSSNHSGMPMPMQGPPMSVRASLPRPNFNGPVSSWEP
RKEQGITQMHCKEQSSLVNEPNMFKNDQDYKVDQVERKPLSPDRSRDDRDLRGREVNRNY
NERDPHKFEWKEKDRRDDRIDRDGRRDDRRDDRKERDTQRDERGRRDDRQSRNDENRNNR
RDRNGRDEFRDDWVKRNDSRERRNHSQDRSLSRPSESLLSGKSPSKNHDNGPDTEFKFKD
KKNTNLPPLAFDSRYSKTEKKPSKTDKNYSEFSTDQEVINSKEFFNEQENKDNDGDDLYD
PLAVCEVATPPGSIVEPKTIVLCKEVSLAVNCIQQKPKSSVLEEAVIDVKDKHINEDEAN
IDTGDKHKYLDEIVLNAGDKRIALDETVLDIDDNLFISNKTAIDARDKPIVIEEIVTDVR
DKNIILEETVLDAGNKKNISKETVLGACDEHIAGNIKNGKIVEEKQEELVENNQ
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgggtggagatatggaattagttcgccaattcaataatgagctttcttcaatttgtgaa
agcaaacctcctgtttcaaaggcaaagatggcttcaataacaaggttagcagtcaaagct
ttgaagcactacaagcacattgtgcacagtgtggaaaaatttctacagaagtgtcgacca
gaatataaaatagcagcactttatgttcttgattcaataattcgacagtcacgacatcag
tttggtcctgacaaagacttattcggtccacggtttcaaaaaaacctcaaatttttattt
cagaacatttttcaatgccctcaggaggacaagccaaaagttgtaagagtgttgaatctt
tggcaaaaaaatactatatattctcctgaagttatatcgccacttattgatatggcttct
accccatcaaaggtgttagctgctgcagttcagaggcataaaagtgcaaaagctgctcat
aatcaatcccttaacaatgaaaacttcgatgacccttttgaagatgatgataatggtgaa
tgcaaaggtggtgtccagatgtctcaagaagatgaaataaaagttcttaaggctcagttg
gagcagcaaaaaaaacatcaagagttgctacagcaacaattgcaaatgcaagttttagct
actagacaacaaaatctccagtttcagttgcagcaatcacaacaaaatcttttgcctagt
actgctctaagtcttccacaacaagtcacgccactaaatccattgttaaaccaagcgtta
aatcctcagttaaaccaagcattaaatcctcagttaagtattctttctcatatacatgat
ctcactttacaacttgaaaaagataaggcaactttagcattactagccagttcagaagac
agtgttcaacctaatagcaaacaagcagctgaatctcaatttcttgaaaattttcaacag
ttaattcaaacagctaaaggttttatacaaaaggatccacgacaacacagtgacattggt
aaatcatctgaagataataccattaataaacagcaatcagcacagcaattatcgcagcca
ttaactttacaatctacacaacaatcaatacttcaattgccaccgcaaccagtgcatcaa
ttgccacaacaaccagtgaatcaattgccacagcaaccaatacatcaggtaacacagcaa
ccagtacaccaattatcacaacaaccagcaccatttgatgaggatgatgaaaacaaaaaa
gcaagaaagtatcatcatggagaagaccttcaatcgagcattacagcagcacaaccaaaa
attcgagaagaacattactctgtaaatgaaggtcctcctaagaaaaagccattgattgat
ctatatgaggaccagttgcgaaagaagaactacgaagaagatgatgatgctatgcagata
gacaacgatgacgaaattcacttaaatgaaagtaagcagcatgggtcaaggtggcaacct
tttactgagcaagttcaacataaccaggaatcacctaaaaatcatggtagaatcgaaagt
agaatagaaaataatacaagattattattggagcacagaaataatatgcctccaccaaag
aaaaatcgagttactgttgcaagtattactgtctgggttggtcgtttgccaaagaattta
tcaatagatgttgttcatgatgcatttcaacagtatggcgaaataaaatctattgattac
attgaagcccgtggttgtgcctttgttactatgaaaagtagagttgaagctgagagagca
ttacgtcacctaaaaaacaagcgtataggtggatatgatgtaaagatggaatggggtcaa
gcaaaaggtttgcagccttattctaaattttgggatgaaagttttgggtgtgcatatatt
ccatgtgacctagttaatgaacaagagctttcttcattattagaaggttcaattattgat
gaagtaacacttcctgtaggattaacacttcctaatgataatgaagaattttttgaatcc
tcaacagaaacttctattccttcagacatgtcagttcctcgtccttttatcatgcctcct
ggtcctttacctttaccagggatgggccttccaggaccagggtttagaggacagtatcct
cctttacatcagatgttgccgatgccttttcgacctccgccacaacacatgattccaatg
caaggaggtggtccgcatattaacaataatcctaattttcatgttcatgatgacatgcct
cgagatcccagagatttgcttaaacagattcatcctcagtttcagccaggaatgtcttca
catagttcaatgcaacactgtgactttggtaatcgacctccttttcatggaagaccccct
gttccacctggagaaccacaacgccatcacatgccaatggctggggaacgttttgggtct
cagctattacctggggagcgcccaccatttgaaagacattggtttacgccagaaaatcgt
ttcaatagcccacgatttccacaagaacaaccattaaattcacgtaacttcaacatgcat
atttctgagcaaagtagtaatcattctggtatgcccatgcctatgcaggggcctccaatg
tctgtaagagcctctttgccacgccctaattttaatggtcctgtatcatcatgggaacca
cgaaaagaacaaggtattactcagatgcattgtaaagaacagtcttctttagttaatgag
cctaatatgtttaaaaatgatcaagattacaaggtggatcaagttgaaagaaaaccttta
agtccagataggtccagagatgaccgtgatctgcgaggcagagaagttaatcgcaattac
aatgagcgagatccccataaatttgaatggaaggagaaggatcgtcgagatgatagaatt
gatcgggatggtcgaagagatgaccgaagagatgatagaaaagaacgtgacacacaacga
gatgaaaggggtcgtagagatgatcgtcaaagcagaaatgatgaaaatagaaataatcgg
cgtgatcgtaatggaagagatgagtttagagatgattgggttaagagaaatgattcaaga
gaaagaaggaatcattctcaagataggtctttaagcaggccaagcgaaagtttattgagt
ggaaaatcaccttccaaaaatcacgataatggtccagacacagaatttaagtttaaagat
aaaaaaaatactaacttaccaccattagcttttgattcccgttattcaaaaactgaaaag
aagccaagcaaaactgacaaaaactacagtgaattctcaactgatcaagaggttattaat
agcaaggaattttttaatgagcaagaaaataaagataatgatggtgatgatctttatgat
ccgcttgctgtttgcgaggtagcgacacctcctggaagtattgttgagccaaaaaccatt
gttttgtgcaaagaagtttcacttgctgttaattgtattcagcaaaaaccaaaatccagc
gttttagaggaagccgttatagatgtaaaagataaacatataaatgaggatgaagctaat
atagatactggagataaacataaatatttggacgaaatcgttttaaatgctggagataaa
cgtatagctttggacgaaaccgttttggatattgatgataacctttttatttcgaataaa
actgctatagatgccagagataagccaatagttattgaggagattgttacagatgtacga
gataaaaacataattttggaggaaactgttctagatgcgggaaataaaaaaaatatttca
aaggaaactgttttgggtgcctgtgatgaacacattgctggtaatataaaaaatggtaaa
atagttgaagaaaaacaagaagaattagtcgagaacaatcagtaa
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