Hydra vulgaris (swiftwater hydra): 100197697
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Entry
100197697 CDS
T01080
Symbol
LOC100197697
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100197697 (LOC100197697)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100197697 (LOC100197697)
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100197697 (LOC100197697)
U7-dependent histone pre-mRNA processing factors
100197697 (LOC100197697)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
100197697
NCBI-ProteinID:
XP_047136980
LinkDB
All DBs
Position
11:complement(41600964..41674620)
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AA seq
750 aa
AA seq
DB search
MTSIIRFTPLSGAQDEGPLCYLLQVDEFKFLLDCGWDENLSQDVIENIKRHAHSIDAVLL
SHPDIYHLGALPYLIGKCNLNCPVYATIPVYKMGQMFLYDFYQSHVNNQDFAHYTLDEVD
AAFDKIIQLKYSQHVSLKGRGHGLSITPYAAGHMIGGTMWKIMKEGEEDIIYAVDYNHKK
EIHLNGAVLETLSRPALLITDSYAALCNQERRKERDIQLMNSILSALRQDGNVLLAVDTA
GRILELMQLLDQMWSAKESGLSVYSLALLNNVSYNVVEFAKSQVEWMSDRMMKSFEVDRR
NPFAFKHITLCHFLKELDQLPSPKVVLASAADMNCGFSKDLFVQWASNPKNSVIFTFKTS
PGSLARTLIDNPKIESVELEVFKRVRLEGVELSQYLEVEKEKARQAKLQRKLTEVDVRQE
NVFKDESESEEEMEEENLNKSKYDLMITNEKLRHKSSFFKQAKIYPMFPFKEERLKWDDY
GEIIRPEDYVIIENNLMEEEGPKITIEDMKEDLEALEIKEPPTKSVSEMVKVDVRCKISY
IDFEGRSDGESVRRILSIVKPRQLILIHGSPAATEALSRYCQTSTQFNVSKVYTPYTNEM
VDATRESHIYQVKLKDSLVSSLKFAVARDTELAWVDGQLVMEARGEKFNQIEQENSEKVE
KQDVVPVLEQLPPEMIPGHATVFIDEPRLSDFKQVLTKAGIQAEFTGGVLVCNNVVAVRR
GEQGKISIEGGLCEEYYVIRQLLYDQYAIV
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaataattcgatttactcctctgtctggtgcacaagatgaaggaccattgtgt
tatcttttgcaagtcgatgaatttaaatttttgcttgattgtggttgggatgaaaactta
agccaagatgttattgaaaatattaaaagacatgcacattccatagatgcagttcttctg
tctcatccagatatataccatcttggtgctcttccatatcttattggaaaatgtaattta
aattgtccagtttatgcaacaattccagtatacaaaatgggacaaatgtttctttatgac
ttttaccagtctcacgtgaacaatcaagattttgcacattatacattggatgaagttgac
gctgcattcgataagattattcaactaaagtattcccaacatgttagtttaaaaggccgt
ggtcatggtttaagtattactccatatgctgctggtcacatgattggtggtactatgtgg
aaaataatgaaggagggtgaggaagatataatctatgctgtagattataatcataaaaaa
gaaattcatctcaatggggctgtacttgaaactttaagcagacctgcacttcttataact
gattcatatgcggcactatgtaatcaggaacgaaggaaggaaagagatattcagttaatg
aattctattttatcagcattgcggcaagatggaaatgttcttcttgctgttgatactgct
ggtcgtatactagagcttatgcaacttttggatcaaatgtggagcgctaaagaatctggt
ttgtcagtttattcgttggctcttcttaacaacgtcagttataatgttgttgaatttgcc
aaaagtcaagtggagtggatgagcgataggatgatgaaaagttttgaagttgatcgtaga
aatccttttgctttcaagcatataactttatgtcatttccttaaagagttagaccaatta
ccttctcctaaggttgtgttagcaagtgctgctgacatgaactgtggtttttcaaaagat
ctttttgtacaatgggcctcgaatccaaagaatagtgtaatatttacatttaaaacctct
cctggaagcttggcacgaactttaatcgataatccaaaaatcgaatccgtagaactagag
gtgttcaaacgcgtgagattggaaggggttgagctgtcacagtatttagaagttgaaaaa
gaaaaagctcgtcaagctaaacttcaacgcaaactaactgaggttgatgtgaggcaagaa
aatgtgttcaaagatgaaagtgaaagtgaagaagaaatggaggaggaaaatttgaataag
tcaaagtatgatctgatgataaccaatgaaaagctacggcataaaagcagtttttttaaa
caagccaaaatctatccaatgtttccatttaaagaagagaggcttaagtgggatgattat
ggtgaaattattagacctgaagattatgttatcattgaaaataatttaatggaggaagaa
ggaccaaagataaccattgaagatatgaaagaagatttagaggcattagaaattaaagaa
cctcctacaaaaagtgttagtgaaatggtcaaagttgatgttagatgtaagatttcttac
attgattttgaggggcgttcagatggtgaatcagtgaggcgaattttatcaattgtaaaa
ccgagacagttgattttgattcatggtagtcctgctgcaacagaagcgttgtcacgttac
tgccaaactagcactcaatttaatgtttcaaaggtttatactccatatactaatgagatg
gtagatgcaactagagaaagtcatatttatcaggttaaattaaaagattcacttgtcagt
tcacttaagtttgcagttgcccgagacactgaacttgcatgggttgatggacaattagtt
atggaagctcgtggtgaaaagtttaatcaaatagagcaagaaaatagtgaaaaagttgaa
aaacaagacgttgttccggtgcttgaacaactgccacctgaaatgattccagggcacgct
actgtatttattgacgaacctcgtctaagtgacttcaagcaagttttaacaaaagctgga
attcaggctgagtttactggaggcgttttagtatgtaacaatgtggttgcagttagaagg
ggagaacaggggaaaatatctattgaaggtggtttatgtgaagaatactatgttattcga
caattactttacgatcagtacgctattgtttaa
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