Hydra vulgaris (swiftwater hydra): 100198100
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Entry
100198100 CDS
T01080
Name
(RefSeq) low-density lipoprotein receptor-related protein 6-like
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg04150
mTOR signaling pathway
hmg04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
100198100
04150 mTOR signaling pathway
100198100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hmg04131
]
100198100
Membrane trafficking [BR:
hmg04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
100198100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
EGF_LRP2
SBBP
Orf78
Adeno_E3_CR2
PMP22_Claudin
DUF6377
YajC
Motif
Other DBs
NCBI-GeneID:
100198100
NCBI-ProteinID:
XP_047135168
LinkDB
All DBs
Position
6:47068081..47140086
Genome browser
AA seq
1696 aa
AA seq
DB search
MCDIFGLTKITYCLVIILRNCYCDQQYKRDVDLIFSNMKDIRRFTFGLSNYSAIVGGLEE
VRALDYDYASDLLFYILVDDQDNYFIMKTSINKPGVSTVVVKGNKNINSFEGISVDWVTK
KIYFTDITTNRVETCQYDGELRRVLVSEMSDQPMGIALLPQEGFMFVAFSGENLRIVRFR
MDGSHRKLLLEVSYPIKMPCSIAVDTATNLVYWGDTLYNQIESMTISGKNRSFIKLDSDK
KPYYIAAFGGKVFWTNQFSKIFAWTFNQTVYEISSFFGSSISPHGIAVYSPDKQPKVNTS
CINNGGCSHLCLLSKDISVCQCPTGVTLKTDKKSCSEIKKFLLVGRKTDVRMISLDVEEF
VDIVLPIKEMRHASSIDYDILEQKVYWTDSYTKSINRVFLNGTGHEQVVKTDIVKPAHLA
IDWIARNLYWSDTSLNRIEVSRLDGYSRKIIVSENLIKPHGIAIDPVGGHIYWSVRGNYT
RIECADLDGGNRIDIVWENLLFVNGIVFYKNILYWTDDGVTEIGMYDTIKKQRFKLSAEV
QQLFAISALDNYLYLTDFLRKVTRFNIATKELRTLISGDSMADVMSIKAVDTQLLTGYNP
CHYQYTKCSHLCFFNVMKNASVCACPAEMELSLDTVTCIVPNGFLLYSGSIDGLKKLSIN
TNRASKLSLPNSKSARLLEIYSNESRIFWSEETDPYYTINSAYLNGSGFKTVVSGGLKNV
NGLAIDWMAQNIYWINGRIEVARLNGLFRKVLIYGEDILELTLIVINPVVSRMYWFQQSL
YGSDQYSLWQANLDGSSRHLLIKGIHPTSCSIDYKTNNIYWVHQKLQDSSIEFYDFKSFK
RVLVHSGLPPTYALLVFQDSLIFGSHGDSTSIKKLSVMGKGQVIDLIKDTPFIHDIKVVH
NGLQLGSNLCSRNNGGCEHLCFALSVTSRVCSCATHYNLVEDGRCFQPEHFLIFSYEFSF
ARVIFQDSVPEAVLPIYSQVKSSAIAFDEVRNFLYWLDSSTTSVSRVHQNGSGYESIMLS
YSESSILPDPYDFALDQFSNSIYWTDKNNNAIKFINLFTRKNGTIFHENLYFPRKIAVFP
EHGSLFWTNEDLESQKCSIMSTKISGVHSTTLLKVRKSIIVDIAIDFISHRLFWLDTDSI
HSISLSGKDFIDNIVQNIHTPVALAVFGQYLFYADSSRSFIYKVSKENITTQTVFHGKYE
HLSSLVVVNLTRGKDSHPCRINNGGCSDICTINYQIDHSPLKSSPMPLCACPLFQSLVNG
STCEVHEHCNSVNEFFCKSDSLCINSSKKCDYKEDCTNGEDELCSYPYQPCNTGFIACGS
KGCIDVSKRCNGKVNCPHGEDEYNCDLCGQNQFHCKDDYRRCINDFQICDGLTDCFDASD
EFNCKKRNLTKVQLTQQTKETSIAAGIISGVVVCIILLIFALFFFIRIRQSKKTVSREQE
MSMWPLNQLSSEIGSLTGESNYTKSSISTYVSTMSKNTDKSFYDRNTVTGASSVVSDYSH
IPLNPPPSPTTDRGFSVISDAPRTYDYTSCDQCSCQTGEEYDAPPPTLASLDELELYCPI
NKHLQANWYHLDSISNNSHQVHNNSNKRVRSRNRNIRNNTSNKINGSHISGKGVSKVDSL
QRQWLCTEESDLDSSYEREGNYGDVNNRLLIFDPPPTPCTNYLSEEDRPSSDTETSVVAY
GNSIRTHFAPPPSPVS
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgacatttttggtttgacaaaaataacctattgtttggtaataatattaagaaac
tgctactgtgatcaacagtataaaagagatgtagacctgattttctcaaatatgaaagac
attagaaggttcaccttcggattgtcaaactattcagcaattgttggtggattagaagaa
gttcgggccctagattatgattatgcttcagatttacttttttatattctagttgatgac
caagataattattttataatgaagacttcaataaataaacctggagtttctactgttgtg
gtaaaaggaaacaaaaatatcaacagttttgaaggtatctcagtagattgggtgacaaaa
aaaatatactttacagacattactactaatcgggttgagacttgtcaatatgatggtgaa
cttcggcgtgttttggtttctgaaatgtcagaccaaccaatgggtatagcattgttaccg
caagaaggatttatgtttgtggctttttcgggagaaaatcttagaatagttcgatttcga
atggatggatcccatcgcaagttattgctagaagtgagttatcctattaagatgccttgt
tctatagctgttgatactgcaacaaatttagtatattggggagacactctttacaatcaa
atcgaatctatgacaatatcaggaaaaaatagaagctttattaaattagattctgataaa
aagccctattacattgcagcatttggtggaaaagtgttttggacaaatcaattttcaaaa
atatttgcatggacttttaaccaaactgtatacgaaatcagtagtttttttggaagttct
atctctccacatggcatagctgtatactctcctgataaacaacccaaagttaacactagc
tgtataaacaatggaggttgttcacatctttgcttgttatctaaagatatttctgtgtgt
caatgtcccactggtgttacgttaaaaactgacaaaaaatcttgcagtgagattaagaag
tttttattggttggtcgcaaaactgatgttagaatgatatcactggatgtagaagaattt
gtagatattgttcttccaataaaagaaatgcggcatgcttctagtattgattatgacatc
ttagagcaaaaggtctactggactgattcttatactaaaagtatcaatagagtgtttttg
aatggaacaggtcatgaacaagttgtaaagactgatatagttaaacctgctcacttagca
attgattggattgctcgtaatctttactggagtgatacatcactgaaccgaattgaggtt
tctcgccttgatggttactcacgaaaaataattgtttctgaaaatcttattaaaccgcat
ggaattgctatagatcctgttggaggtcacatctactggagtgttaggggaaattacact
agaattgagtgtgctgatttagatggtggcaaccgaattgatatagtttgggaaaatttg
ctatttgtaaatggtattgttttttataagaacattctttactggactgatgatggagta
acagaaatcggaatgtatgatacaataaaaaagcagcgttttaaactttcagctgaagtt
caacaactatttgcaatatctgctttggataattatttatatttgactgattttctacgt
aaagtaactcgttttaacattgctacaaaagaacttagaacgcttatatcaggtgattca
atggctgatgttatgagcataaaagctgttgatactcagctattaactggttacaatcca
tgtcactatcaatatactaaatgcagccatctttgcttttttaatgttatgaaaaatgct
tccgtttgcgcttgtccagcagaaatggagttgtctcttgatactgtgacatgtattgtt
ccaaacggctttcttttatattctggtagtattgatggacttaaaaagttgtcaataaat
acaaacagagcttcaaaactgtcattgccaaactctaaatcggcaagattactggaaata
tattctaatgaaagtcgtatcttctggtcagaagaaacagatccctactatactattaac
agtgcatatttaaatggtagtggatttaaaactgttgtttctggaggcttaaaaaatgtt
aatggtttagcaattgactggatggctcaaaatatttactggattaatggtaggattgaa
gtggcaaggcttaatggtttatttcgaaaagtcttgatctatggagaagacatattggag
cttactctgattgtaattaatccagtagttagtcgaatgtattggttccaacaaagtttg
tatggatcagatcaatattcattatggcaggctaatttagatggttcatctagacatctt
ttaataaaaggaattcatccaacaagctgctccattgattacaagacaaacaacatttat
tgggttcatcaaaaattgcaggattcttctattgagttctatgattttaaatcttttaaa
cgtgttttagttcatagtggtttaccccccacatacgcattgcttgtatttcaagacagt
cttatatttggaagtcatggtgactctacatcaataaagaagttatctgtgatgggaaaa
ggtcaagttattgatctgataaaagatactccttttattcatgacataaaagttgttcat
aatggtcttcaactaggatcaaatttgtgctctagaaacaatggtggatgtgaacatctt
tgctttgctttaagtgttactagtagagtttgcagttgcgctactcattataaccttgtt
gaagatggccgttgttttcaaccagaacattttttaatttttagttatgagttctcattt
gcacgtgtgatttttcaggactcagttcctgaagctgttttacctatttatagtcaggta
aagtcttcagctattgcttttgatgaggttcgtaattttttgtattggttagactctagt
acaacttcagtatctagggtgcatcaaaatggaagtggttatgaaagtataatgctttct
tattctgaatccagtattttaccagatccatatgactttgccttggatcaatttagtaac
tccatttattggaccgataaaaataataatgctataaagtttattaatttatttacaaga
aaaaacggaacaatttttcatgaaaatttgtattttccgcgcaaaatagctgtttttccc
gaacatggcagtttattttggaccaatgaagatttagaaagtcaaaaatgtagcatcatg
tcaactaaaatatcaggtgttcactctacaactttgttaaaagttagaaaatcgattata
gttgacatagctatagattttataagccatcgccttttctggttagacacagactccata
catagcatttcactatctggtaaagattttattgataacatagttcaaaatattcataca
cctgtagctcttgctgtgtttggccaatatttattctatgctgatagttcaagaagtttt
atttataaagtttctaaagaaaatataacaactcaaactgtttttcacggtaaatacgaa
catttatcaagtttagttgttgtaaatttaacacgaggaaaagattctcatccttgcaga
attaacaatggaggttgcagtgatatttgtactatcaattatcaaattgatcattcacct
ttaaaaagttccccaatgcctttgtgtgcatgcccactgtttcaatctcttgttaatggt
agcacttgtgaagttcatgaacattgcaacagtgtcaacgaatttttttgtaaatctgat
agcttatgcataaacagttcaaaaaagtgtgattataaagaagactgcacaaatggtgaa
gacgaactgtgttcttacccttaccaaccatgcaatacaggctttatagcatgtggaagt
aaaggttgcatagatgtgagtaaaagatgcaatggtaaagttaattgtcctcatggagaa
gacgagtataattgtgatttatgtggccaaaatcagttccactgcaaagatgactaccga
agatgcattaatgattttcaaatatgtgatgggttaacagactgctttgatgcctctgat
gagtttaactgcaaaaaaagaaatttaactaaagttcaactaactcaacagactaaagag
actagcattgcagctggaataatatcaggtgttgttgtttgcataatattacttattttt
gcgttgttttttttcatccgaattcgacaatcgaaaaaaactgtttctcgagaacaagaa
atgtcaatgtggccgttgaatcaacttagttctgaaattggttcattaactggtgaaagt
aattatacaaaaagttccatatcgacgtacgtatctactatgtcaaaaaatacagataaa
tcgttttatgatagaaataccgttactggtgcttcttctgtcgtttccgattatagccat
attcctttaaatcctcctccatcgccaacgactgatcggggattttcagtgatttctgat
gctcctagaacgtacgattacacatcgtgtgatcagtgtagttgtcaaactggggaagaa
tacgatgctccaccacctacattagcttcattagatgagttagaattgtattgcccaatt
aacaaacatttacaagcaaattggtaccatttagatagcatttcaaataattctcatcaa
gttcataataacagcaataagcgagtgcgaagtagaaaccgcaacattcgcaataacact
tctaataaaattaacggctcccatatttctggaaaaggagtttctaaagttgattcctta
caaagacaatggttatgtacggaggaatcagacttggactcttcttacgaaagagaggga
aattacggagacgttaacaatcgacttttaatatttgatccacctcctacgccgtgcaca
aactatttgtcagaggaagataggccttcctcagatacagaaactagtgttgtagcatat
ggtaatagtattcgtacgcattttgcgcctcccccatctccagtaagctag
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