Hydra vulgaris (swiftwater hydra): 100198333
Help
Entry
100198333 CDS
T01080
Name
(RefSeq) uncharacterized protein LOC100198333 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100198333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100198333
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100198333
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100198333
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100198333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
zf_UBZ
YqzE
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
100198333
NCBI-ProteinID:
XP_047126205
LinkDB
All DBs
Position
2:complement(47903625..47920071)
Genome browser
AA seq
1365 aa
AA seq
DB search
MAGTNNVTNKAKEVAEEYKSALADLTFNSKPMINLLTMLADENRDCAQTIVQAICDRIKQ
VVVEEKMPALYLLDSILKNLCGEYVAIISKYVTETFCHVFEQAKDERKRLQLFKLRNTWN
QYLPGKTLHDLDIKTNRFDPNWPICASTATNVQNINFTNTPPAVVTPTPQKVIHVNPKFL
QKKEENLNIAVTLAATIAGEHADKEPGSLPNKIAKEILLQKERQIQDRLKKLQTEKLLRE
RQHHEETLRKQTLERERVLAEQKRKLELLKKQQQSLASQPKEVISQPSKSNDLGQSSFVK
DPRLRSDSQSKDEANLSSNLKAGSNKNLTGKSAVNVMNKIMTSLQPKNLKSQTKKTDNEK
VRENHVTSKPSSSASNFNTAISSKPCFSKKSNNETTASQSVRLDSKSKVVEAKTNTTAAL
PKNVENTLAVSTEQMPSNSSSNTSHSLVPLPNAFAQLSDRDMQIAAQAAAIATAMHQMQS
SKNGIIDTGQSASLAATLIQLVQSTAPPIKPPCDLSTPPNDSSSRVEKKETSNSYSSDQS
FVNETETKNKEAFLAGRNYHQKGVDDIQNKNRNDAPQLRNKTRQNMSSVKDDSNSLQYDN
NREHSIAPGLRNKDWGREQYYDEPPSKKLCDEVDRSRKARARSPSRYHFRMEKKIEVDKK
LDNKEPFRQNVYKNNNEVHTFDHHEERIRKPYIDEQSDLDDIDLLDGNERNFAPAGAKPE
RLTQEEWIELKKVRRKEFRNIKGKIYDTERENPDTFPMEVYDDLNREIIFKCKGGSISNE
QSVALQDILDKVSNEMARKKQYIRPNLHVEPENDHLHWRSHEDSRQYDRFSPNLPPFERH
PDIRPNSLRPFRPAINERNGPWQPPIEGRMPPFRDEHQFRGRMRAQHNRDQRPLHFPRPH
GMECRGRFSQRPPTYDINGEISNPRSQLNDHHPHMVHPKSFHSRPPNTGNIHGSVSHPEN
RPLLDSHSPPHQTHSTALSLWHETLPGEHFPNLPPNHFSSSVHNFHDKDFNRSLFYDVHF
SDSSGQTRQEPPNQEKTGVVNVQNLLGQLIAAGVLNQEKTTSKVDTDIPNISLKIDDLKK
RYQPVINNLFLGEQCSSCGERFPCNEQNLYREHLDWHFRQNRKEKDGIRKVSSRAWYYDL
NTWVEHSVTQFAVEDGKAQSVYFESERSVCDEVKDITTSLKSVKQTEKDLTISVAADDED
PVCYVCTEPLEQFWSEELDEWRFKLAVRENKRLYHYHCFKDYVPFELDDSTLALTPTTSI
LPFTLKIESGDSLPFKTENTPEDVLVSETNTGLKIETLDEPMDIDRIVKKDPSNECRTSE
SDVLSNIHLLIKSEPLDDSVNIEERCENSVHNISTDACLAPEINL
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggctggcaccaataacgttactaacaaggcaaaagaagtagccgaggagtataagtct
gctcttgctgacctaacatttaattcaaaaccaatgataaatctgttaactatgcttgct
gatgaaaatagagactgtgcacaaacgattgttcaggctatatgtgacagaataaagcaa
gtagtagttgaagaaaagatgcctgctctctacctgctagactctattttaaaaaatttg
tgtggggaatatgttgcaataatctcaaagtatgtcactgaaacattttgtcatgttttt
gaacaagctaaagatgaacggaaaagattacagctgtttaagcttcgtaacacttggaat
cagtaccttcctggaaaaacacttcatgacttagatataaaaacaaaccgatttgatccg
aattggcctatttgtgcctctacagcaacaaatgttcaaaacataaattttactaatact
ccacctgctgttgtcactcctactccacaaaaagttattcatgttaatcctaagtttctg
cagaaaaaagaagaaaacctaaacattgcagtgactttagcagcaacaattgctggagaa
catgctgacaaggaacctggaagcttacctaataaaattgctaaggagattttgttacaa
aaagaaagacagattcaggatagattgaaaaagttgcagacagaaaagctgcttcgagaa
agacaacatcatgaagaaacattgcggaaacaaactttggaacgagaacgagtgctagct
gaacaaaagagaaagcttgaactccttaaaaaacaacagcaatcattggcttctcagcct
aaagaagtaatttcacagccatcaaaaagtaatgatttgggacaaagtagctttgttaaa
gaccctcgattaagaagtgattcacaaagtaaagatgaagccaatttgtcttctaactta
aaagctggatcaaataaaaatcttactggaaaatcagctgtaaatgtaatgaacaaaata
atgactagtctgcaacctaaaaatctaaaatctcaaacaaaaaaaactgataatgagaaa
gtcagagaaaatcatgtaactagtaagccttcaagctcagcttctaattttaatactgca
atttcatctaaaccatgtttttcaaaaaaatcaaacaatgaaacaacagcaagtcaatct
gttagattagattctaaatcaaaagttgttgaagcaaagacaaatacaacagctgctttg
ccaaaaaatgttgaaaacacactagctgtatcaacagagcaaatgccaagtaacagctcc
tctaatacctctcattcccttgttccgttgcctaacgcatttgctcaactaagtgatcga
gatatgcaaatagctgcacaggctgctgctatagctactgctatgcaccaaatgcagtca
tctaaaaatggcattattgatacaggtcaatcagctagtttagcagctacattaattcaa
ttggttcaatcaactgctcctcctattaaacctccatgtgatttatccacaccgccaaat
gattcttcaagtagagtagaaaaaaaagaaacttcaaatagttattcttcggatcaatca
tttgtaaatgaaactgaaactaaaaataaagaagcatttcttgctggcagaaattatcat
caaaaaggtgtagatgatattcagaataagaatagaaacgatgctccacaacttcgcaac
aaaacccgacaaaatatgtcatcagtaaaagatgattcaaatagtttacaatatgataat
aacagggagcattcaatcgctcctggattaagaaataaagattggggtagggaacaatat
tatgacgaaccaccaagtaaaaaattgtgtgacgaggttgatagatcaagaaaagccaga
gcacgttcaccttctcgttatcattttcgtatggagaaaaaaatagaagttgataagaag
ttagataacaaagaaccatttagacaaaatgtttacaagaacaataatgaagttcatact
tttgaccaccatgaagaaagaataagaaaaccatatattgatgaacaaagtgatttagat
gacatagatcttcttgatggcaatgaaaggaattttgcacctgctggtgcaaaacctgag
cgtctgactcaagaagagtggattgagttaaaaaaagttcggagaaaagagtttagaaac
attaaaggcaaaatttatgatactgaaagagaaaatccagatacttttccaatggaagta
tatgatgacttaaacagagagattatttttaaatgtaaaggtggttcaatatcaaatgag
caaagtgttgctctgcaagatatcttagataaagttagcaatgaaatggctagaaagaag
caatatataagacctaatcttcatgtagaacctgaaaatgaccatcttcattggagatct
catgaggattctaggcaatatgatagatttagtcctaaccttcctcccttcgaaaggcat
cctgacattagacctaatagtcttcgaccttttaggcctgcaataaatgaaagaaatgga
ccatggcaacctccaattgaaggtagaatgccaccatttcgagatgaacatcaatttaga
ggaaggatgcgagcacaacataacagagatcagagacctctgcattttccaaggccccat
ggaatggagtgtaggggaaggtttagtcaaaggcctccaacttatgatattaatggcgaa
atttctaatcctcgatctcaactaaatgatcatcatcctcatatggttcatcccaagagc
tttcattcacgacctccaaatactggaaatattcatggttctgttagtcatccagaaaat
agacctttattggattcacattctccaccacaccagacacattcaactgctctcagttta
tggcatgaaacacttcctggtgaacacttcccaaatttacctcccaatcacttttcgagt
tctgtacacaactttcatgacaaagattttaatagatctcttttttatgatgttcatttt
tcagactcatctggacaaactagacaagaaccacctaatcaagagaaaactggtgtggta
aatgttcagaatcttttaggacaattaatagctgctggagttctaaatcaagagaaaaca
acttctaaagtagacacggatataccaaatatttctctaaaaattgatgatttgaaaaag
cgttatcaaccagttattaacaacctatttcttggagagcaatgctcttcttgtggtgaa
cgttttccttgcaatgaacaaaatctatatagggaacatctcgattggcattttcgacaa
aatagaaaagagaaagatggtattcgcaaagtgtcatctagggcgtggtactatgacttg
aatacttgggtggaacatagcgtcactcaattcgctgttgaagatggaaaagctcaaagt
gtatattttgaatctgaacgctcggtctgtgatgaagttaaagatataactacttcactt
aaaagtgtaaaacaaactgagaaagatttaacaataagtgttgctgctgatgacgaagat
ccagtttgttacgtttgtacagaacctctggaacagttttggtctgaagagttggacgaa
tggaggtttaaattggctgtgagagaaaataaaaggttgtatcattatcactgctttaaa
gattatgtaccttttgaactggacgattcgacactagcgcttactccaacgacatcgatt
ttaccatttactttaaaaatcgaaagtggagattccttaccatttaaaactgaaaatacg
ccggaagatgttcttgtttctgaaactaatacaggtttaaaaatcgaaacgttagacgaa
ccaatggatatcgataggatcgttaaaaaagaccccagtaatgaatgcagaacgagcgaa
tcggatgttttatcgaatattcatttattaataaaatctgagcctctcgatgactcagta
aatattgaagaacgttgtgaaaattctgttcataatataagcacagatgcttgtttagcg
ccagaaataaatttatga
DBGET
integrated database retrieval system
