Hydra vulgaris (swiftwater hydra): 100198798 Help Entry 100198798         CDS       T01080                                  Name (RefSeq) spliceosome RNA helicase DDX39B   KO K12812   ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] Organism hmg  Hydra vulgaris (swiftwater hydra) Pathway hmg03013   Nucleocytoplasmic transport hmg03015   mRNA surveillance pathway hmg03040   Spliceosome Brite KEGG Orthology (KO) [BR:hmg00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100198798   09122 Translation    03013 Nucleocytoplasmic transport     100198798    03015 mRNA surveillance pathway     100198798  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:hmg03019]     100198798    03041 Spliceosome [BR:hmg03041]     100198798 Enzymes [BR:hmg01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.7  DEAD-box RNA helicase      100198798 Messenger RNA biogenesis [BR:hmg03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      100198798 Spliceosome [BR:hmg03041]  Complex C   Other components    EJC/TREX     100198798  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     100198798 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD Helicase_C ResIII CMS1 Cas3-like_C_2 Utp25_C P-loop_SecA Dark_CARD Motif Other DBs NCBI-GeneID:  100198798 NCBI-ProteinID:  XP_002164853 UniProt:  T2MDK8 LinkDB All DBs Position 6:complement(21633037..21637646) Genome browser AA seq 433 aa AA seqDB search MADVQDEEFIPDYEEQSDNEAAAEDGVQATDSVKKEVKGTYVSIHSSGFRDFLLKPELLR AIVDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDSQVSVLV MSHTRELAFQVSKEYERFSKYLPNTKVAVFFGGLSVKKDEQTLKTNCPHIVVGTPGRILA LARDKVLNLKHVKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLNKEMRLV CKKFMQDPMEVYVDDETKLTLHGLTQHYCKLKDNEKNRKLFDLLDALEFNQVIIFVKSVQ RCIALSNLLVEQNFPAIAIHRSMPQEERISRYRQFKDFQKRILVATNLFGRGMDIERVNI VVNYDMPEDSDTYLHRVARAGRFGTKGLAISFVSDEEDAKVLNGVQDRFEVNVSELPAEI DVSTYIEGYEAQR NT seq 1302 nt NT seq  +upstreamnt  +downstreamnt atggctgatgttcaggatgaggagtttatacctgattatgaagaacaaagtgataacgaa gctgctgctgaagatggtgttcaagcaactgatagtgttaaaaaggaagtgaaaggaaca tacgtatcaatacacagttcaggatttagagactttttgttaaagccggagttattaaga gcgattgttgattgtggttttgaacatccatctgaagttcagcatgaatgtattcctcaa gcaattcttggaatggatattgtatgtcaagcaaaaagtggaatggggaaaacagctgta tttgtcctggctactctccagcaacttgaacctgttgatagccaggttagtgttcttgtc atgtcacataccagagaactggcttttcaagttagcaaagaatatgagcgattctcaaaa tatcttccaaacactaaagtagctgtattttttggtggtctaagtgtaaaaaaagatgag caaacattaaaaacaaactgcccgcatattgttgttggtactcctggtcgtattttagca ctcgcaagagataaagttttgaacctaaaacatgttaaacactttattctagatgagtgt gataaaatgcttgaacaattagatatgcgtcgtgatgtgcaagaaatcttcagaatgaca ccacacgaaaagcaagttatgatgttcagtgcaacacttaataaagaaatgcgcttggtt tgcaaaaagtttatgcaagatcctatggaagtttatgttgatgacgagacaaagttgact ctgcatggcttaactcagcattactgcaagttaaaagataacgagaagaatagaaaatta tttgatttacttgatgctttagaatttaaccaggttataatatttgtgaaatctgttcaa agatgcattgcactatcaaacttacttgttgaacaaaatttccctgctattgccattcat cgatctatgccacaagaagaaagaatttctcgttatcgacaattcaaagattttcaaaag cgtatacttgttgcaacaaatttgtttggaagaggaatggatattgagcgagttaatata gttgttaactatgatatgcctgaagactctgatacataccttcacagagttgctcgagct ggacgttttggcacaaaaggcttagccatttcctttgtttctgatgaagaagatgctaaa gttctgaacggagtccaggatcgctttgaagttaatgtcagcgaactccctgcagaaata gatgtctcaacctacattgaaggctatgaagcgcaacgttaa

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