Hydra vulgaris (swiftwater hydra): 100198946
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Entry
100198946 CDS
T01080
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100198946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100198946
03041 Spliceosome [BR:
hmg03041
]
100198946
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100198946
Spliceosome [BR:
hmg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100198946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF3755
RWD
Flavi_propep
PDEase_I
Motif
Other DBs
NCBI-GeneID:
100198946
NCBI-ProteinID:
XP_047142668
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All DBs
Position
10:11520443..11532288
Genome browser
AA seq
682 aa
AA seq
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MKTKSDDIKRRMSTRSSETLVVNDKDLSTENSEGNSTKIITTKKQCTDRQIFQYEEQEAI
SRDSHDDVDLFCRTCRNIEVAISDINDLKKSKDGCEEIKEKRIDAVILATNLKKLNRLTQ
MRGKNAAEKTQAAKSKVDSLHLELQNLLYEVVHIKKEIQQCVNFSSKDEDIDLVDIDTFY
KEAPIELSHPEVTKTDAHKQMLARLDWELKRRKQLVEQKNKFLEEKKKIEDEINSKTNYL
NSLKPHLAQIMKTTEPVQELMGVSFETERLMFESAQYLSRPLYLLYVQAKAYRDTCDKVM
QVEIEGDINEAKNDLQTETVIIDESDDSDSENVESFETNGESHRNRKKEGTLNRLEEKRN
KLLTPHPLYVRIKWKKKDTYELDMLFKYLPQLNVSCIQVNLNIEGSTSFPLLSSDVILRD
LLASDSGSELPSVASKYQLECLGSESFDPYIKLVGYPYLWVQWICGLNNLPNKKLQNTMT
DSAINMKHFQTVIKHIRKRIKGRLSLQRQLHLLESLQLPDLNSPCKSFSVLTSWKELTLE
EFMSYEKGRALFAMEIVPRDSMYYSATVTREENLDVLVAIHPNYPQEPPVFLLSIQTACI
EKRNSLRNLEREINAFTEELVLKCSSDMLLSSMLHKLAVCFDIFVETGEKISSKDRLYIR
KLRGRDRNRPYRYQNEGYFIQR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaaaaagtgatgacattaaacgacgcatgagtacacgaagcagtgagactttg
gtggtcaatgataaagatctttcgacagaaaattctgagggaaattctacaaagataatt
actacaaaaaagcaatgcacagatcgccaaatctttcaatatgaagaacaagaagccatt
tcacgagattctcatgatgatgttgatttgttttgccgcacatgtcgtaatattgaagtt
gctatcagtgatataaatgatttgaaaaaaagcaaagacggatgtgaagaaatcaaagaa
aaacgtattgatgctgttattctagctacaaatttaaagaaactaaacaggcttacccaa
atgagaggaaagaatgcagcagaaaaaactcaggcagcaaaatcaaaggttgatagtctt
catcttgaacttcaaaatcttttgtatgaagttgtgcatatcaagaaagaaattcagcaa
tgtgtcaacttttcatcaaaagatgaagatattgatttggtagacattgatacattttat
aaagaagctcctattgaactttctcatccagaggtaactaaaacagatgcccataaacaa
atgttggctagacttgattgggagttgaaacggcgtaaacaattggttgaacagaaaaat
aaattcttagaagagaaaaaaaaaattgaagatgaaattaattctaagacaaattattta
aatagtttaaaaccacatctcgcacaaataatgaagactactgagcctgtacaagaactt
atgggtgtgtcatttgaaactgagcgtttgatgtttgaatctgcacagtatttatccaga
cctttatatttactgtacgttcaagctaaagcttacagagatacatgtgataaagtaatg
caagttgaaatagaaggtgatataaatgaagctaaaaatgatcttcaaacagaaactgta
attatagatgagagtgatgattctgattcggaaaatgttgaatcctttgaaactaacggc
gaaagtcacagaaatcgaaaaaaggaaggcacactcaatcgtttagaagaaaagcgaaac
aagttgttaactccccatcctctttatgtgcgaataaaatggaaaaaaaaagacacgtat
gagttagatatgctgtttaaatatttgcctcaattgaatgtgagttgtatccaagtaaat
ttaaatattgaaggttcaacatcttttcctctattatcatctgacgtcattttgagagac
cttttagcctcagattcaggcagtgaactaccaagtgttgcaagcaagtatcaattagaa
tgcttaggttcagaatcttttgatccttatataaaattggttggttatccatatttgtgg
gtccagtggatctgtggattaaataatttaccaaacaaaaaacttcaaaatacaatgacc
gattctgcaataaatatgaagcatttccaaacagtaatcaaacatatacgaaaaagaata
aaaggaagactgtcgttacaaaggcagttacatctgcttgaaagcctccagcttcctgat
ttaaacagtccttgtaaatcgttcagtgtattaacaagttggaaagagcttacattagag
gagtttatgagttacgaaaagggaagggcgttgtttgcaatggaaatcgtcccgcgtgat
tctatgtactactctgctacagttactcgagaagaaaacttagatgttttagtggctata
cacccaaactatcctcaagaaccgccagtttttttactaagtatacaaactgcttgtatt
gaaaagcgaaatagcttaagaaatttagaacgtgaaataaatgcttttacagaagaatta
gtccttaagtgctcatcagatatgcttctttcatctatgcttcataagttggcggtatgt
tttgatatatttgtcgagacaggggaaaagatttctagtaaagatcgactttatataaga
aaattaagaggacgcgatcgtaatcgaccttatcgttatcaaaatgaaggatattttata
caacgttaa
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