Hydra vulgaris (swiftwater hydra): 100199004
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Entry
100199004 CDS
T01080
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hmg04121
]
100199004
Enzymes [BR:
hmg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100199004
Ubiquitin system [BR:
hmg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
100199004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_10
zf-RING_UBOX
PDZ_Tricorn
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
100199004
NCBI-ProteinID:
XP_002159074
UniProt:
T2M2T8
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All DBs
Position
13:30407905..30419303
Genome browser
AA seq
1008 aa
AA seq
DB search
MGIELERFVDSMVHDASCFICSCILEDPLEINPCGHHFCRGCWLNWSTKNSCCAFCGASV
VGVKDSRLLWSLIQNHNVYCIQKEKGCPAIYKFGFNKLHEGQCLYQGYNRVELNDKCTVC
ENDSGMTHDCLKELSLKMKQCSIRIINLEHENQHLSYKLMNREKEYLERISEIESQFYEE
SLKYNKEIRDLRLRAAATQGEQGKKNNQIYYVHIDLERLNGSLGFNIMGGATQDDKHSDG
IIVSRIVEGGAADGKLQLHDCILEVDSVDLRSATHELAVKAFRESGNPVKMLVRRQISKS
ATSDFVDVGTQTFGVMFAVTCEEEFNEKHTNSFCKPQETLCKFSNQKRWLNPHEFTESIH
KEGVSMMSQQNSDTNKNEQYDSAYDTLLTQKSSRSVRLDTTRNSQVSHDTTRVASPTDSI
DKSTTRSSPVLKNNDNTSGVTLRNKIKTEQAENNRLSTFYILPSDISAKEWNDVEKVVNF
DYDFEYEEVVLKKSNGKFGLLLCVGGDENDVAVYVGDLEEGSEAETTGKVMVGDQIVQIN
GCQVKNVENAYKILQENETITLVVARAVYEQQSDCFDEAEETDLDLLDSINEEAESHYLS
LSNPVKLLDNATYDNKAFSYKNHISEKCQHANEKNLGIAPVTNNNNDNNIERLREEIIDN
TKSEKMTSVLKNFVRNKFGNSEKTDKRSSCGSDESKDQNKIPRCDSNSSSTSGKSIKTQL
NEESAFIKEQKHLSKMKAYLDSPSIARHRVNQKIIQPRSSINLETYQAISCRNTKEVDQC
NLPVKQFSSTYTLPCTENTDKSLNNRRYCDSISSLRSSMKTNLVSNKTKPEKHVQIDSHP
GWNATEKRVWEEFKIIQSMEAKENSLDPTKIEAEWRVRRSKDGKHVYIKKTNSNRNKVLK
EREDEINKERCGMTTDDDAFTIYQGQYWDRDQRKRQLVRHQDRRQKLLEKAAIKATYQNE
TGRKIAEFVQRNMTLPGAVFDNFITIEEILSQRNRSGIFNGPIHVTTI
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgggtattgaattggagcggtttgttgattctatggttcacgatgctagttgcttcata
tgcagttgcattttagaagatccattagaaattaatccttgcggacatcatttttgccgg
ggttgctggcttaattggagtaccaaaaattcttgttgtgcattctgtggcgccagtgta
gttggagttaaagattcaagactcttatggagtctgattcaaaatcacaatgtatattgc
atccaaaaagaaaaaggatgcccagcgatatataagtttggttttaacaaactacacgaa
gggcagtgtttgtatcagggctataatcgtgtggagttaaatgataaatgcaccgtttgt
gaaaatgattcgggtatgactcacgattgtttaaaagaattatcattaaaaatgaaacaa
tgctcgataagaataataaatctcgaacacgaaaatcaacatctgtcctataagttgatg
aacagagaaaaagaatatttggaacgaatttcagaaatcgaaagtcaattttatgaagag
tctttaaaatataataaagaaatacgggacctacggttacgagctgctgctactcaagga
gaacaaggcaagaaaaataatcaaatatattacgtacatatcgatctagaaagacttaat
ggaagtctgggtttcaatataatgggaggtgcaacacaggacgataagcattctgatggt
attattgtatctagaattgttgaaggtggtgctgctgatggtaaattacagcttcatgat
tgtattttggaggttgatagtgtagatttaagaagtgcaacacacgaactagctgtaaaa
gcatttcgcgaatctggaaaccctgtaaaaatgcttgttcgacgacaaataagtaaaagc
gcaacaagtgactttgttgatgttggtacgcaaacgtttggagtcatgtttgctgttacc
tgcgaagaagaatttaacgagaaacatactaattctttttgcaaaccacaagagacacta
tgcaagtttagcaatcaaaaacgttggcttaatcctcacgagtttacggaatcaattcat
aaagagggtgtgagcatgatgagtcagcaaaattcagatacaaacaaaaacgagcagtat
gattccgcatatgatacattacttacgcaaaagtcatcacggagcgtacgactcgatacg
acacgcaactcccaagtttcacacgatacgacacgagttgcatctccaacagattcgatt
gataaaagcacaacacgttcatctccggttttgaaaaacaatgataacacatcaggtgtc
acactaagaaacaaaattaaaactgaacaagctgagaacaaccggcttagtacattttac
attcttccctcagatatatctgcaaaggaatggaatgacgttgaaaaagttgtcaatttt
gattatgattttgagtacgaggaagttgttttgaaaaaatcaaatgggaagtttggccta
ttactttgtgtaggtggtgatgaaaacgacgtagctgtttacgttggagacttagaggaa
ggctccgaggctgaaactacggggaaagttatggttggcgaccaaattgtacagattaat
ggctgtcaagtaaaaaatgttgaaaatgcatacaaaattttacaagaaaacgagaccatt
actctagtggtagctagagcagtttatgagcaacaaagtgattgttttgacgaagcagaa
gagactgatttagatttattagatagcataaatgaagaagcagaatctcattatttatct
ttaagtaatcccgttaaactgttagataacgcaacatatgataataaagcgttttcttat
aaaaatcatatttctgaaaaatgtcaacatgcaaatgaaaaaaatttgggaatcgctcca
gttacaaataataataatgataataatattgagcgtttacgagaggaaatcatagataac
acaaaaagcgaaaaaatgacgtcagttttaaaaaactttgtccgaaataaatttggaaat
tcagaaaaaacggataagcgttctagttgcggaagcgacgaatcaaaagatcaaaacaaa
atacctcgttgtgatagtaattcgtcttctacaagtgggaaaagcattaaaacacaatta
aatgaagagtcagcatttataaaagagcagaagcatttatcaaaaatgaaagcttactta
gattctccttcgatcgcaagacacagagtaaatcaaaaaattattcaaccaagatcatca
atcaatctagaaacttatcaagcaataagttgtaggaatacaaaagaagttgatcaatgc
aatttacctgtaaagcaattttctagcacttacactttgccatgtacagaaaatacggat
aaatcattaaataatcgccgatactgtgatagtattagtagtttgcgttcttctatgaaa
actaatttagtatcaaataaaactaaacccgagaaacatgttcaaatagactctcatcca
ggatggaatgctaccgagaaaagagtttgggaagaatttaaaataatacaaagcatggaa
gcaaaagaaaactcactagatccaacgaaaatagaggctgaatggagagttcggcgctcc
aaagacggaaaacatgtctatattaaaaaaactaattcaaaccgcaataaagttttaaaa
gagagagaggatgaaataaacaaagagcgttgcggcatgactaccgatgacgatgctttt
actatataccaaggacaatattgggaccgagatcaaagaaaaagacagttagtgcggcac
caagatcgtcgtcaaaaacttttagaaaaagctgcaataaaagctacataccaaaatgaa
actggacgtaaaattgcagaatttgttcaacgaaatatgacgctaccaggtgccgtattt
gataattttatcactattgaagaaattttatctcaaaggaacagatctggaatatttaat
ggtcctatacacgtcacaacaatataa
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