KEGG   Hydra vulgaris (swiftwater hydra): 100200124
Entry
100200124         CDS       T01080                                 
Name
(RefSeq) gem-associated protein 5 isoform X1
  KO
K13133  gem associated protein 5
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hmg03019]
    100200124
   03041 Spliceosome [BR:hmg03041]
    100200124
Messenger RNA biogenesis [BR:hmg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100200124
   mRNA cycle factors
    P-body specific factors
     100200124
Spliceosome [BR:hmg03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    100200124
SSDB
Motif
Pfam: TPR_GEMI5 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_RIG_2nd Beta-prop_WDR5 WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WD40_WDHD1_1st EIF3I Beta-prop_IFT140_1st WD40 Beta-prop_RIG_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_Aladin WD40_Gbeta Beta-prop_HPS5 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_DCAF12 TPR_IFT122 Beta-prop_TEP1_C TPR_WDR11 Beta-prop_SCAP Beta-prop_VPS8 WDR54 TPR_ELP1 eIF2A Fe_hyd_SSU
Other DBs
NCBI-GeneID: 100200124
NCBI-ProteinID: XP_047143757
LinkDB
Position
2:complement(10485907..10558166)
AA seq 1448 aa
MTSKSDNENWRKQESSNSFQFQEVSDNFPCIIPASPNWYCSNIMTCMNGYIAFGGKWAVY
LLNLRKNPPVCEEYLFGSPGYSCKVTAVAFCQFDKNISLSVLPSHCAFGMEDGLVKLIIC
ETKSMLKEHRKHQVKITAISWSPLDNNVIITGDEKGVMVIWNVEENCLNVWTPISNMISC
LDMSPNLHNIAAIGYGNGNVCVCDIKKLQVMQVFKSHIDEVCTLSWCPKYFREKHCFVSG
SKDFTMKVWDINTEKFLFSYTVPKNLPSKKKEESQKMKVTKYLSVLWLNDNQILSSHSSG
KILCWDLESSSWRALEGGHNRLVYALKNDATTNQFVSFSIDRQLVIWSSRLMKPVHTIPT
VGGFLYSLSSTPLDPHSIAFGCGDNMIRVWNTADSTQSYKCTTLWQGIKTKVLIIKYHPS
KEGILAFGTEDGHVGCYNVLSKKYDIATSYHQKSVYCLAWGPNCISIDERINSLYTIGGE
GTILMHKMGSFNIEAINISTLIKTENKLVSVPRRSEASWRSDFLFIAIGNEDGTIDILST
KMHCVCKVLVHKKMINTLAWHHSYSLDISGGNFLCWLASGSDDYNVCVTDVADVLNNNNN
ELVSVIKPTRQLSNQTGRITQVLWSPHTNGVLALASFDGSVQVWNILTGEGIAHYGGHIG
RVYTVMWSYSDRDVLYSGGDDFTLQRWRISEQNFKTSSPAKKSKTRGKKNKNKIADLKTN
KQSQIDSNTPNELPNNNKPVGGEQIEGTVSLSVNEFSVIDLGKGLVKDVDNKKKRMRSLL
KKSSVADSKAKEAMQVDCIALAQYLKAENEEEDTGVLVCNITPGSEEHPNLGLYSTRKDA
YKLLQTECEGHKKNNSIEQLIQLETWRNNISGLINDAAQNNSLNDVIVALSPLGGFDLWR
ACVLAYAEQLEKKRNFNSAALYFLAVGETQKAINVFKDNGLFKEAVALAKVRLSKNNPLI
QELYLLWAQKLIEENNNENAAECFLAAGKINEAITVLAKKGDSSSLLTAIKVADIYDMKK
CSAEYLYRCIDLLISEHKWDICGSLLNPITIVQVSHLRAVVSELLVDKLETCDLVIASFD
NHDQHRYYTKQEYFSNSASFLENVLVVLETCYKSIFVHNHFASLNLTSLKHEKINNLLGK
DPKEIIGIVADRVLSGILSLLEFDIENCFKVWLTAFNGLLSSGFNNSLIFLFETLFPKSQ
MSYIELKTKFGRALSSDYVENDCFTNFVAFKYVGYLYKAWWKRASRDICNVGDTDLFKNM
LNNIVDDFNYNTLENNKITLNNNDFFYLIVFLKKILLSDDHIQYYNVIEQIDLVDREIIE
HDIKHNLIAYTRKNNIHDTQNVKNAGRIVKELVDDMIELVIRQSSCDDSSQNANAILPEV
NSNMQQRQSLVAEAEAFKICVKEYAFPHPRESVFVFEWLCRFEKDQCFKSLHEDILKWIF
RYKITKSR
NT seq 4347 nt   +upstreamnt  +downstreamnt
atgacttcaaagagtgacaatgaaaattggagaaagcaagagtcatctaatagttttcag
tttcaagaggtttctgataattttccttgtataataccagcctctccaaattggtattgt
agtaatattatgacatgcatgaatggctatatagcttttggtgggaaatgggctgtttat
ttattgaatttacgaaaaaatcctcctgtttgtgaagaatatctatttggaagtccaggg
tacagctgtaaagttacagctgttgcgttttgtcagtttgacaaaaacataagtttatct
gttcttccaagtcactgtgcatttggaatggaagatgggcttgttaaattaataatttgt
gaaactaaatcaatgcttaaagaacatcgtaagcaccaggtaaagattactgctatttca
tggtctccattagataataatgttattattacaggtgatgagaagggagtgatggtaata
tggaatgttgaagaaaattgtctgaatgtttggactcccatctccaacatgatttcgtgt
ttagatatgtcgccaaatcttcataatattgcagctattggatacggtaatggcaatgta
tgtgtttgcgatataaaaaaactacaggtcatgcaagtttttaaaagtcatatagatgaa
gtttgcactttatcatggtgcccaaaatattttagggagaagcattgttttgtttctgga
agtaaagattttaccatgaaagtgtgggatattaatactgaaaagtttttgttttcttac
acggtaccaaaaaatttaccaagtaaaaaaaaagaagagtcacaaaaaatgaaagttaca
aagtatctatctgttttatggctgaatgataatcaaattttatcttcacattcaagtgga
aagattttgtgttgggatttagaaagtagttcatggagagctttggaaggtggacataat
cgattagtgtatgctttaaaaaatgatgctactacaaatcagtttgtatctttttcaatt
gatagacaattagttatctggagttccagactaatgaaaccagttcatactattccaaca
gttggagggtttctttattcattatcttcaacacctctcgatcctcattcaatagctttt
ggttgtggagacaatatgataagagtatggaatacagctgattcaactcaaagttataaa
tgtactactttgtggcagggcataaaaaccaaagtattgattataaaatatcatcccagc
aaggaaggtattttagcatttggaactgaagatggtcatgttggttgctataatgttttg
tctaaaaagtatgatatagctacatcatatcatcaaaagtctgtctattgtcttgcttgg
ggaccaaactgtatttcaatagacgaacgaattaactcactgtatactataggaggagaa
ggaactatactcatgcataaaatgggttcttttaacatagaagctatcaatatctccaca
cttataaaaacggaaaataaacttgtgtctgtaccacgaagaagtgaagcatcgtggcgt
agtgactttctatttattgcaatagggaatgaagatgggacaatagatatcttatcaaca
aaaatgcattgtgtctgtaaagttcttgttcataaaaagatgataaatactttagcctgg
catcattcttacagtttggatatttcaggtggaaattttctttgctggttagcatctggt
tctgatgattacaatgtgtgtgttacagatgttgcagatgtactgaataacaataacaat
gagttagtaagtgtcattaaacctactcgccagctttctaatcaaactggccgtattaca
caagttttgtggagtccacatacaaatggtgtactagctttagcctcttttgatggttct
gtccaagtttggaatattttaactggagagggtattgctcattatgggggccatataggg
cgtgtttatacagttatgtggtcttattcagatcgtgatgtgttgtattcaggtggtgat
gattttactcttcaaagatggagaatttctgaacaaaattttaaaacctctagtcctgca
aaaaagagtaaaacaagaggtaaaaaaaacaaaaataaaatagcagacttaaaaacaaac
aagcaatcacaaattgactcaaatactccaaatgaacttccaaataacaataagccagta
ggcggtgaacaaattgagggtactgtatcactttctgtcaatgagttttctgttattgat
ttgggaaagggtttagttaaagatgttgataataaaaagaaaagaatgcgatctttgttg
aaaaagtcatctgttgctgattctaaagccaaagaggccatgcaagttgattgcattgct
ttagcacagtatttaaaagctgaaaatgaagaagaagatacaggagtacttgtctgcaac
attactcctggttctgaggagcatccaaatctgggactatatagtacaagaaaagatgct
tacaagttgcttcaaactgaatgtgagggtcataaaaaaaataactcaatagaacaactt
attcagctagaaacatggaggaataacatctctggtctaattaatgatgcagctcaaaat
aacagtttaaatgatgtcattgtagcactgagccccttaggtggttttgacttgtggaga
gcttgtgttttagcatatgcagaacagctggagaagaaacgcaattttaattctgctgca
ctttatttcttagcagttggtgaaacacaaaaagctattaacgtttttaaagataatggc
ttatttaaagaagctgtagctttagcgaaagtgcgactatcaaaaaacaatcccttaatt
caggaactttatttgctgtgggcgcaaaaacttatagaggaaaataacaatgagaatgct
gcagaatgctttttggctgctggaaaaatcaatgaagcaattacagtgttggcaaagaaa
ggtgattcatctagtctgctgactgctattaaggtagctgacatctatgacatgaaaaaa
tgttctgcagaatatttatatcgatgcattgatttattgatcagtgagcacaaatgggat
atttgtggttccttgttaaatccaattacaatagttcaagtctctcatttgcgtgcagtt
gttagtgaacttttagttgataaattagaaacatgtgatttagttatagcttcatttgat
aaccatgatcaacatcgatattatacaaaacaagagtacttttcaaacagtgcttcattt
cttgaaaatgtattagtggttttagaaacttgttataagtcaatttttgttcacaatcat
tttgcatctctgaatcttacatccttgaagcatgaaaagattaataatcttttaggaaaa
gatccaaaagagattataggaatagtagctgatcgtgtactttcaggaattttgtctttg
ctagagtttgacatagaaaattgttttaaagtatggctcacagctttcaatgggctatta
tcgagcggttttaataactctttaatttttttatttgaaactctttttcctaagtcacaa
atgtcctatatagaactaaaaacaaaattcggtcgtgctttgtcgtctgactatgtggag
aacgattgttttacaaactttgtagcttttaaatacgttggttatttatataaggcatgg
tggaaacgtgcttccagagacatatgtaatgttggagacacagaccttttcaagaatatg
ctcaataacatagtagatgattttaattataatactttagaaaacaataaaatcactttg
aataataatgattttttttatttaatagtttttttaaaaaagattctattatcggatgat
catattcagtattataatgtaatcgaacaaattgatttagttgaccgagaaataattgaa
catgacataaagcataacttaatcgcttacactcgcaagaataacattcacgacacgcaa
aatgttaagaatgcaggtcgcatagttaaagaacttgttgatgatatgattgaattggta
attcgccagagttcttgtgatgatagcagtcaaaacgcaaacgcaattttgccagaagta
aattctaacatgcaacaaagacaaagtttagttgctgaagcagaagcttttaaaatctgc
gtaaaggagtatgcgtttcctcaccctcgtgaatcggtttttgtatttgagtggttgtgt
cggtttgagaaagaccaatgcttcaaaagtctacatgaagacatactcaaatggattttt
agatataagattacaaagtcacgttaa

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