Hydra vulgaris (swiftwater hydra): 100200314
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Entry
100200314 CDS
T01080
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hmg03037
]
100200314
Cilium and associated proteins [BR:
hmg03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
100200314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR19_1st
WDR55
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_WDR35_TULP_N
TPR_IFT80_172
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40
TPR_GEMI5
Beta-prop_CAF1B_HIR1
PEP5_VPS11_N
Hira
Consortin_N
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
100200314
NCBI-ProteinID:
XP_047144444
LinkDB
All DBs
Position
11:14250313..14318941
Genome browser
AA seq
1422 aa
AA seq
DB search
MAVYFDYKILPHYEDSHCSLTSWHSNFPLLAVGFVRDSMGYVALYLDEGEHIENSKIERE
FTVSKLSWHPHRKILASGWKNGCLIIWNEHAKEWNEAPKFHLTEITCIWWNRTGSRLITS
DQAGLVCVWKIDQRGKFQQSPMFKNELRSSVVSGVLKVSVGLDVSIDITAAAKAAISGNK
NALDLFDMEKSSSFSNIEEIQLFIATKDGNVYFLDEKGKCKSCFKVDSSILYLLYYENQD
VVVTITDALFLTQHSLKDGNYKEISKVKLSGQASSLVVTWAGSGIIAISSKSHVVRLLDI
RTDQNFVLNLDKSFGFKANECINFIAFSHSQGTLAGGTDQGHVALWKYNSLKNDDQLWVL
QPPSEVVGSVTHLEWGASLGLIAVNCVSSVTILNKATMSYSFSGNIAAVQLSPAHLLIKF
FPSLHVEDLKTDMHIKGVHCNKNHAAIWNGKKVAIYEIPENKSFIRSARSFTCDAHKVAV
YEQNVYLIDSHSISIRTFQGTVKQELTFLEKEGDPLDLNICGSHMVIATNRGVLKIYDLS
RREARQVSVTKHLEDCISKLGKIHLIKINCNGTKVAVLSQNSNYITTPILYVWEVESDKI
QSFNFMSGESNYELLDDLLTTQQQLTDAIKGYVPKSVFWDSIEPKLLVCETVRMSSINQE
ETSIQKDLYDDSLSLIVTMFSCPEYGLVVQDHFKMDPSYTGLLGMDTPFCYFIQSGQHRD
QCVARKTMRDFVEFENGDQVTKAAMMSYSYLSAIGNMDEAFKAIKSIKSPSVWENMARMC
VKTKRLDVAFVCLGNMGNAAAVKAIRDAQLSEVEVDAHVAMLAIQVGMHEEAEQLYKNCH
RYDLLNIFYQASNNWTQAIECAEKHDRIHLRTTFYCYGQYLEDLGNKEGAVENFEKSGTF
RFEVPRMMMDDVDELQAYILKRKDKELMKWWARYLESLGDMEAALFFYKQSEDYLSMVRI
HCFCENMKEAEQLCQDTGDKAACYHLACQFEISGNIPKSIHFFSRAQCYSNAIRLAKEKQ
LDQELMNLSMLSTQEDMLSCAQYFEEKGGMDDKAIALYHRGGSVSKAIDLAFSSKQFGAL
QLISDDLDENVDPQVLHKCADFFIENDQFDKAVNLLIASKKFEEALRMCLDHDIQITEEI
AEKMTFPKEHSDAKYRLYLLEKIGECAYKQGSFHLATKKFTQAGNKMKAMKSLLKSGDTE
KIVFFAGVSRQKEIYVMAANYLQSLDWQKDPEILKNIISFYTKGRALESLSTFYESCAQV
EIDEFENYEKAFGALTEAYKCLSKAKPKNVTVQEEKLALIKTKLTLMKKYIHARKEYSST
PDESVSSCELLLEDPDVNVAIQIKHIYAFLIEHYINVRNYKKAYHLMEDFRKCCPSVKLE
KVISKGHIQKVYAELGIALKPTKDKEIDKDPEEEIDEEDGYI
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttattttgattataaaattttaccacattatgaagacagccattgcagcctt
acgtcttggcatagtaactttcctctgcttgctgttggatttgttagagactccatgggg
tatgtggcgctttatttagatgagggtgaacacattgagaattcgaaaattgaaagagaa
tttacagtcagtaaactttcatggcatccacatcgcaaaattcttgcaagcggatggaaa
aatggttgtcttattatatggaatgaacatgccaaagaatggaatgaagctccaaagttt
catttaactgagattacttgtatatggtggaatcgaacaggatctagactcataacatca
gaccaggctggtttagtgtgtgtttggaaaattgatcagcgaggcaagtttcaacagtct
cccatgtttaaaaacgagttacgatctagtgttgttagtggtgtactaaaagtatctgtg
ggtttggatgtttcaatagatattactgctgctgcaaaagctgcaattagtggtaataaa
aatgctctcgatttgtttgacatggaaaagagttcaagttttagtaatattgaagaaata
cagctgtttattgctacaaaagatggtaatgtttacttcttggatgaaaaaggaaaatgc
aaatcgtgttttaaagtggattcttctattttatatttactatactacgagaatcaagat
gttgttgttacaattactgatgctttattcctgactcagcattcattaaaagatggaaac
tacaaagaaatatctaaggttaagctaagtggtcaggctagcagtttggttgtgacttgg
gctggttctggaattatagctatatcttccaaaagtcatgtagttcgtcttttagatata
agaactgatcagaattttgtgttaaaccttgataaatcatttgggtttaaagccaatgag
tgtatcaattttatagcattcagtcattctcaaggaactttagctggtggcacagaccaa
gggcatgttgctctatggaagtacaactcattaaaaaatgatgatcagttatgggtttta
caacctccatctgaggttgttggaagtgttactcatcttgaatggggtgccagtctgggg
ctaatagctgtcaactgtgtatcttcggttacaatactaaacaaagcaaccatgagttat
agtttcagtggaaatatagccgctgttcaattatcacctgctcatctcctgatcaagttt
tttccatctttgcatgtggaagatttaaaaacagatatgcacataaagggtgtgcactgt
aataagaatcatgctgcaatatggaatggcaaaaaagttgcaatttatgagatacctgaa
aataaatcttttatcagatctgctcgaagttttacttgcgatgcccacaaagttgcagtg
tatgaacagaatgtctatttgattgattcacattcgatatcaattagaacttttcagggt
acagtaaaacaagaacttacattcctggaaaaagaaggtgaccctcttgatttgaatata
tgcggatctcatatggtaattgcaacaaatagaggtgtacttaaaatatatgatctgtca
cggagagaagcacgccaagtaagtgtcaccaagcacttggaagattgtatttcaaaactt
ggaaaaattcatctgatcaaaattaattgcaacggcacaaaagttgctgtattgtctcag
aatagcaactatatcactacccctattttgtatgtgtgggaagtagagagtgataaaatt
caatcttttaattttatgtctggagaaagtaactatgaattacttgatgatttattaact
acacaacaacagctaacagatgctatcaaaggttatgtgcctaaatcagtattttgggat
tctattgagccaaaacttttagtatgtgagacagttcgaatgagttctattaaccaagaa
gaaacaagtattcaaaaagatctttatgatgatagtttatcattaattgtcacaatgttt
agctgtccagaatatggcttggttgttcaagatcattttaaaatggatcctagttatact
gggttattagggatggatacacctttttgttacttcattcaatcaggtcagcatagagat
caatgtgtggcaagaaaaacaatgcgtgactttgtagaatttgagaatggcgaccaggta
actaaagcagccatgatgagttacagctatttatctgcaattggtaatatggatgaagct
tttaaagctattaagtctattaaaagtccatctgtttgggaaaatatggcacgaatgtgc
gttaagacaaagcgtctggatgttgcgtttgtgtgcttaggtaacatgggtaatgcagca
gcagtgaaagcaattcgtgatgctcagttatcagaagttgaagttgatgcccatgttgca
atgcttgccatacaagtgggaatgcatgaagaagcagagcagttgtacaagaattgtcat
cgatatgatcttcttaatatcttttatcaagcttcaaacaattggactcaggctattgaa
tgtgctgaaaagcatgatagaattcatttaagaaccactttctactgttatggacaatac
cttgaagatttgggtaataaagaaggtgccgttgaaaattttgaaaaatctggtactttt
cgctttgaagtaccaagaatgatgatggatgatgtggatgaactacaagcatatattctc
aaaagaaaagataaggagttgatgaaatggtgggcccgatatcttgaaagcttaggtgat
atggaagctgcattgtttttttataagcaatctgaagactatctatcaatggttcgcata
cactgcttctgtgaaaatatgaaagaagcagagcagctttgtcaggatactggagataaa
gcagcatgctaccatcttgcatgtcaatttgaaatttctggaaatataccaaagtcaatc
cattttttttctcgtgcacaatgttattcaaatgcgattcgtttagcaaaggaaaaacag
ctagatcaagagttaatgaacttatccatgcttagtactcaagaagatatgctaagctgt
gcccagtattttgaagaaaaaggaggtatggatgataaagctattgcactgtatcacagg
ggaggtagtgtttcaaaagctattgatcttgccttcagttcaaagcagtttggtgctctg
caattaatatcagatgatcttgatgagaatgttgatccacaagtactacataaatgtgca
gattttttcatagaaaacgatcagtttgacaaagcagtcaaccttcttattgcttcaaaa
aagtttgaagaagcacttcgaatgtgccttgatcatgatatccaaataacagaagaaatt
gcagaaaaaatgacttttcccaaagaacactctgatgcaaaatatcgtttatatttactt
gaaaaaattggagaatgtgcgtacaaacaaggatcttttcaccttgctacaaaaaaattt
actcaggctggaaataagatgaaggctatgaaatcgttattaaaatcaggagatacagaa
aagatagtgttttttgctggtgtatcaagacaaaaagaaatatatgtaatggctgcaaac
tatttgcagtctttagattggcagaaagatccagaaattcttaagaatatcattagtttt
tatactaaaggccgtgctcttgaatcattatcaacattttatgagtcttgcgctcaggtt
gagatagacgagtttgagaattatgaaaaagcgtttggtgcacttactgaggcttacaag
tgtctttcaaaagctaaaccaaaaaatgttacagttcaagaagaaaaacttgcattaatc
aaaacaaaattaactctcatgaaaaaatatatacatgcaagaaaagagtattcaagcact
cctgatgaaagcgtgagctcttgtgaattgcttttagaagatccggatgttaatgtagca
atacaaattaaacatatttacgctttcttaattgagcattacattaatgttcgtaactat
aaaaaagcatatcatttaatggaagattttcgcaagtgttgtccttccgtaaaactcgaa
aaagttatttctaaagggcatattcaaaaagtatatgcagaacttggtattgcattaaaa
ccaactaaagacaaagaaatagataaagatccagaggaagagatagatgaagaagatgga
tacatttag
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