KEGG T01080: 100200529

Hydra vulgaris (swiftwater hydra): 100200529

Entry

100200529         CDS       T01080

Name

(RefSeq) DNA-directed RNA polymerase II subunit RPB3

K03011

DNA-directed RNA polymerase II subunit RPB3

Organism

hmg Hydra vulgaris (swiftwater hydra)

Pathway

hmg03020

RNA polymerase

hmg03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:hmg00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100200529
  09124 Replication and repair
   03420 Nucleotide excision repair
    100200529
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hmg03021]
    100200529
   03400 DNA repair and recombination proteins [BR:hmg03400]
    100200529
Transcription machinery [BR:hmg03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100200529
DNA repair and recombination proteins [BR:hmg03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100200529

SSDB

Motif

Pfam:

RNA_pol_A_bac RNA_pol_L

Other DBs

NCBI-GeneID:

100200529

NCBI-ProteinID:

XP_002158521

UniProt:

T2MGQ0

LinkDB

Position

6:complement(47270838..47271803)

AA seq 273 aa
MPYASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLH
DEFIAHRIGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLDVKCTGETTRHVTSRDL
ISEDPKVIPVTSRIKDDDTGYGETDEIVIVKLRKGQELKLHAFAKKGFGKEHAKWNPTAG
VSFEYDPDNALRHTTFARPDQWPKSEYSQLDEDQYEAPYDIHAKADKFYFNVESCGSLKP
ENIVMTGISVLKKKLSELQTHHSHEIAADVLAI

NT seq 822 nt +upstreamnt +downstreamnt
atgccatatgcaagtcagccaagagtaaaaattttggaatggacagatgataatttgaaa
tttatattggaaaatacagatttatctgtagcaaatagtcttcgtaggatatttattgca
gaagttccaacaattgcaatcgattgggttcaaattgaaaacaacacatcagtacttcat
gatgaattcattgcccatagaattggtttaatcccactgactagtgatgaaaaagttgat
aagatgtgttattctcgagattgcacttgcagtgaattttgtgatgaatgctctgttaaa
tttacacttgatgttaagtgtactggtgaaactacacggcatgtaacaagtcgggatcta
atatctgaggatcctaaagtgataccagtaacatctcgtataaaggatgatgatacaggg
tatggtgagactgatgagattgttattgttaaacttcgaaaaggtcaagagttaaaacta
catgcattcgctaagaaaggttttggaaaagaacatgctaaatggaatccaacagcaggt
gtttcatttgaatatgatcctgataatgcattgcgtcatactacatttgcaagacctgac
caatggcctaaaagtgaatattcacagcttgatgaagaccaatatgaagctccttatgat
atacatgctaaagcagataaattttattttaatgttgaaagttgtggttcacttaaacct
gaaaacattgtcatgacaggaattagcgttttaaagaaaaagcttagtgaattgcaaacc
catcatagtcatgaaattgctgctgatgttttggctatttga

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