Hydra vulgaris (swiftwater hydra): 100200641
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Entry
100200641 CDS
T01080
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03030
DNA replication
hmg03410
Base excision repair
hmg03420
Nucleotide excision repair
hmg03430
Mismatch repair
hmg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100200641
03410 Base excision repair
100200641
03420 Nucleotide excision repair
100200641
03430 Mismatch repair
100200641
03440 Homologous recombination
100200641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmg03032
]
100200641
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100200641
Enzymes [BR:
hmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
100200641
DNA replication proteins [BR:
hmg03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
100200641
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
100200641
MMR (mismatch excision repair)
DNA polymerase delta complex
100200641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
divDNApol
REV3_N
Motif
Other DBs
NCBI-GeneID:
100200641
NCBI-ProteinID:
XP_047145987
LinkDB
All DBs
Position
13:6224734..6291943
Genome browser
AA seq
1088 aa
AA seq
DB search
MADKRKLSSSNNKKKRQKFEDFTPSSFEEDLAFIESLEIESQSTNGGSQNDEIYIPTRQL
TSNSTKWRRPNLPVINPDTDTIIFQQLEVDHYTGSALQGMPGPTSGPTQIVRFFGVTMQG
NSVLCHIHGFVPYFYIVAPQDFKEEKCSQYRDCLDKAILADMKSKNDISHAVLNVEPVMK
ASIYGYNFNKKRLFLRITVALQKLIAPAKRILEGGLFIFGPGGCHTYESNIDFEVRFMVD
TNTFGCNWIELPKGSYQVRKGSSMKSRCQIEVDVAFDKFISHEPEGQWDKIAPIRILSFD
IECAGRKGIFPEPEKDKVIQIANMVIYQGEKEPFIRNVFTLDTCAPIVGSQVLTYQNESD
LFKAWSDFVNEVDPDMITGYNIVNFDFPYLLNRAKVLNVPSFSYLGRILSEKTTISSTVF
QSRAYGKRENKVINTTGVVQFDLLHILLRDYKLRSYTLNSVSYHFLKEQKEDVHHAIISD
LQNGNEQTRRRLAVYCMKDAILPLRLLDKLMCVINYMEMARVTGVPLSYLLTRGQQVKVV
SQLLRKSKEHDFILPAQKIEAGDEYEGATVIDPIKGYYRKPIATLDFASLYPSIMMAHNL
CYTTLLSKCDLERMNPDEYIVTPCNHYFVKKSVRKGLLPEILENLLSARKKAKSDLKGET
DIFKAKVLDGRQLALKISANSVYGFTGAQVGKLPCIEISSSVTAFGRQMIERTKQLVEDK
YNIKNGYKYDSKVIYGDTDSVMVQFGPDNVPDSMELGREAAAYVSNEFIDPIKLEFEKVY
YPYLLISKKRYAGLYYSKPDTFDKMDCKGIETVRRDNSPLVAKLINTCLQKLLIDRDPEG
AVVYTKQVISDLLCNRIDISELVITKELTKTEEEYGNKQAHSALAEKMKKRDAGSAPKLG
DRVPYVIIAGVKGAKGYEKAEDPIYVLENNVPIDTKHYLEHQLMKPLLRIFEPILGENKA
ADLLFKGEHTLVKTVITAKVGGLAKFAKKMATCIHCKAVLAKGKENSAVCDYCKPKESEL
FQKEMSTLYSLEEKFNKLWTQCQRCQGSLIEEVLCTSSDCPIFYMRKKVQKDLTHQDEVV
QRFGEFTW
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaagttatcatcatcaaataataaaaaaaaacgtcaaaaatttgaa
gattttactccaagcagttttgaagaagatcttgcatttatagaatcattagaaatagag
agtcagtctaccaatggtggaagtcaaaatgatgaaatatatattccaacaagacaattg
acaagtaattctacaaaatggcgacgtcctaatttaccagttataaaccctgacactgac
acaattatttttcagcaactagaggttgatcattacacaggatcagctctccaaggaatg
cctggaccaactagtggtcctacgcagattgtgcgattttttggtgttacaatgcaaggt
aacagtgttctttgtcatattcatgggtttgttccttacttctatattgtggctccacaa
gattttaaggaagaaaaatgtagccagtatcgtgattgcttagacaaagctattcttgct
gatatgaaatctaaaaatgatatttctcatgctgtgctaaatgttgagccagtgatgaaa
gcaagtatatatggttataattttaacaaaaagcgtttgtttcttcgtatcacagttgct
ctgcaaaaacttattgcaccagcaaaacgaattttagaaggtggtttatttatatttgga
ccaggaggttgtcatacttatgaaagtaatattgattttgaggttcgatttatggttgat
accaatacatttggatgcaattggattgaattaccaaaaggttcatatcaagtgcgaaaa
ggttcatcaatgaagtcacgttgccaaatagaagtagatgttgcttttgataagttcatt
agtcacgaaccagaaggtcaatgggataaaattgcaccaataagaattcttagttttgac
atcgagtgtgctgggcgcaaaggtatatttccagagcctgaaaaagataaagttattcaa
atcgcaaatatggttatttatcaaggtgaaaaagaaccatttatacgtaatgtctttaca
cttgatacttgtgcccctattgttggaagtcaagttcttacttatcagaatgaaagtgat
cttttcaaggcatggtctgactttgtaaatgaagttgatccggatatgataactggatac
aatatagttaactttgattttccataccttcttaatcgagctaaggtgcttaatgttcca
agtttttcttatcttggtcgaatattgagtgaaaagacaactatatcaagtactgtgttt
caatctcgtgcatatggcaagcgtgaaaataaagtcattaacactacaggagttgttcaa
tttgatcttttacatattttattgcgggattacaagctacggtcttacactttaaattca
gttagctatcattttttaaaagaacaaaaagaagatgtacatcatgccattatttctgat
ttgcagaatggtaatgaacaaactaggcgtcgtttagctgtgtactgcatgaaagatgcc
atattaccattgcggcttcttgataaattaatgtgcgttattaattatatggaaatggct
cgtgtaacaggagttcctttatcatatcttctcactagagggcaacaagttaaagttgtt
tcacaattgcttcgcaagtcaaaggagcatgattttatacttcctgcacaaaaaattgaa
gctggtgacgaatatgaaggtgcaactgttattgatcctattaaagggtattaccgaaaa
ccaattgcaacccttgattttgcatctttatatccttctataatgatggcgcacaatttg
tgttacacaacacttctttcaaaatgtgatttagaaagaatgaacccagatgagtatatt
gttacgccatgcaaccattactttgtcaagaaaagtgttcgcaaaggtttgcttccagaa
atcttagagaatcttctcagtgcaagaaaaaaagcaaaatctgatttaaaaggagaaaca
gatatatttaaagcaaaagtattagatggacgacaacttgcattaaagataagtgctaac
tcagtgtatggatttactggagctcaagttggaaagcttccttgcattgagatatcatct
agtgtaactgcatttgggcgtcaaatgatagagcgaactaagcagctagtagaagataaa
tataatattaaaaatggttacaaatatgactccaaggtcatttatggagatactgattct
gtaatggtacagtttggtccggataatgtgccagatagcatggaacttggaagagaagct
gcagcatatgtatcaaatgagtttattgatcctattaaactggagtttgaaaaggtttac
tatccttatttactgattagtaaaaaacgctatgctggcctttattactcaaaaccagat
acatttgataaaatggactgcaaaggaattgaaacggttagaagagataactcaccatta
gtcgcaaaattaataaacacttgtctacaaaaactcttaattgacagagatcctgaaggc
gctgtggtatatacaaaacaagtaatatctgatctgttgtgtaatagaattgatatatca
gagctagttattacaaaagaattgacaaaaactgaagaagagtatggtaataagcaggct
cattctgctcttgcagagaagatgaaaaaacgtgatgcaggttcagctcctaaacttggc
gatcgagttccttatgtcattattgctggcgtaaaaggtgccaaaggttatgagaaagct
gaagatccaatctatgtgttagaaaataatgtcccaatcgatacaaaacattatcttgag
catcaacttatgaaaccattgctgcgcatattcgagccaatacttggagaaaataaagcg
gcagatcttttatttaaaggtgaacacaccctagtgaaaacagttataacagcaaaggtt
ggcggtttagcaaagtttgcaaagaagatggctacttgtatccactgtaaagctgtgctt
gcaaaaggaaaagaaaattctgccgtttgtgactactgcaaaccaaaagaatcagaactg
tttcaaaaagaaatgtcaacgctttattctctagaagaaaagtttaacaaactttggaca
cagtgtcaacgatgtcaaggaagtttaattgaagaagtattgtgtacaagtagcgactgt
ccaatattttatatgcgaaaaaaagttcagaaagacttgacacatcaagatgaggttgtt
caacgttttggtgaatttacttggtga
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