Hydra vulgaris (swiftwater hydra): 100200659
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Entry
100200659 CDS
T01080
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100200659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100200659
Enzymes [BR:
hmg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100200659
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100200659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
R3H
HTH_Tnp_1_2
Motif
Other DBs
NCBI-GeneID:
100200659
NCBI-ProteinID:
XP_002160561
UniProt:
T2MHQ0
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All DBs
Position
6:24983883..24985636
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AA seq
502 aa
AA seq
DB search
MEVTRSNFDAAFELIKSEINNTDFISIDAEFSGLSTIKSNSGSCSNLEEKYNMLKDGSNK
LLLIQYGISLFKWSEKKKSYKAMPFNFYICPRPYKKVHNDVIFVCQSSSIDFLAKNGFDF
NKLFHQGVSFMSPWEEEKAREKLKKEINFIAHNELHRRTLIQTTTNVSDDVEKKSSVFIP
RDQRDFINSVCENIEKFMKDDSLKTYDLPPCSPFQRTLLYEYLEEKYPRGLYLKSVVNEN
NEKIIRGVKITKNEEIFNKRIAEENLLLDEIIGFTKVIRLLSDCRKPLIGHNMLMDLFLT
TTNFFSLPPENLSEFKVLLISLFSSIFDTKLLCSMQPLSSKVGGTSLEKLKTFVDDNRLP
NPEVKLSNKLNNHSKSKNEYHQAGYDAYCTGLVFISLLRCLADQVGSKLERIDFSWNLLK
PFENRIFIWGIKDTQYMELHHSSLCCIAKSDNKKRSQSIFDSSNKLPSKKKKLTEVEDGE
ISSDSDFEENNSSKMFEQPSIW
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacgagaagtaattttgatgctgcttttgagcttataaaatcagaaattaat
aacactgattttatttccattgatgcagagttttctggtttaagtactattaaaagcaat
tctggaagttgtagtaaccttgaggaaaagtataatatgttaaaagatggatctaataag
ttacttctaatacagtatggtattagtttatttaagtggagtgaaaaaaaaaagtcttat
aaagcgatgccttttaatttttatatctgcccgaggccttataaaaaggttcacaatgat
gtgatatttgtttgtcaaagttcaagtattgattttctagctaaaaatggatttgatttt
aataaactatttcaccaaggagtttcatttatgtctccttgggaagaagaaaaagctaga
gaaaaattaaagaaagaaattaattttatagcacataatgagttgcatagaagaactctt
attcaaacaacaacaaatgtgtcagacgatgttgaaaaaaaatctagtgtttttattccg
agggatcaaagagattttattaatagtgtatgtgaaaatatagaaaaatttatgaaagac
gactccttgaaaacatatgacttaccaccatgtagtcctttccaaagaacacttctttat
gagtatctggaagaaaaatacccaagaggattgtatttgaaaagcgttgttaatgaaaat
aatgaaaaaattatcagaggagtgaaaattaccaaaaatgaagaaatttttaataaaagg
attgcagaagaaaatctattacttgatgaaatcattggattcactaaagtaataaggctg
ctttcagactgccgtaaacctttaattgggcacaacatgttgatggatctttttttaaca
accactaactttttttcattacctcctgaaaatttaagcgagttcaaagtattacttata
tcattgttctcttcaatttttgatacaaaattgctttgtagcatgcaaccattaagttca
aaagttggagggacatctcttgaaaagcttaaaacttttgttgatgacaatcgcttgcct
aatcctgaagttaaattatcaaataagttaaacaaccattctaagagcaaaaatgagtac
caccaggcagggtatgatgcctattgtactggtttggtatttattagtcttttaaggtgt
ttagctgatcaagttggttcaaagttagagagaattgatttttcatggaacttgctgaaa
ccatttgaaaatcgaatttttatttgggggattaaagatacccaatatatggagcttcat
cattccagtttatgttgcattgctaagagtgataataaaaaacgttcgcaatctatcttt
gattcttcaaataagttaccttccaaaaaaaagaaattaacagaagttgaagatggtgaa
atctcaagtgactctgattttgaggaaaacaatagcagtaaaatgtttgaacaacccagt
atatggtaa
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