Hydra vulgaris (swiftwater hydra): 100200809
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Entry
100200809 CDS
T01080
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hmg04812
]
100200809
Cytoskeleton proteins [BR:
hmg04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
100200809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Katanin_con80
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
eIF2A
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
WDR54
Beta-prop_NOL10_N
Beta-prop_IP5PC_F
WD_LRWD1
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Ge1_WD40
Beta-prop_LRRK2
Beta-prop_RIG_1st
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
100200809
NCBI-ProteinID:
XP_047127250
LinkDB
All DBs
Position
1:19486263..19524839
Genome browser
AA seq
715 aa
AA seq
DB search
MSNPKRSWKLQEFVAHSANVTCLAMGPASGRVMVTGGEDKKVNMWAVGKPNVILSLSGHT
STVECVQFNNSEELVCAGSQSGSLKIWDLEAAKIVRTLTGHKANIKCLDFHPYGEFVASG
SLDTTVRLWDVRRKGCIVSYKGHTNAINHLKFSPDGRWVISAGEDGMVKLWDLNAGKLLA
DFILHAGPVNCVEFHPREFLVATGSSDRTVKFWDLETFGLVSSTDVEASAVRTICFHPDG
SCLFSGGLDSLRVYAWEPSCCYDAQTLGWGKVAGMAFSTNQLIGASFQSTNVSVWVANML
DLEEIISRSAMQPPFEKIDVKEKEPVKHVESVLDKKQSPQRKSFNTRPKTSSTKPKPSKD
SQVLPDAVVQKINDPNINYEAVFNPLSALSRSPKLNKKNVQPFAVPNEDPQSSGQVDSSI
KPLEKLPPPVKQSAPMVVPVQLPPKQPVSYMPINRHQALIEPSQQTYVVTNAEASNAPST
YYPQQLPSNDYPIQYQHQPRVSQPIRKQSAQQGPALIKEMDNLNLDNFSQVEESSKLMKN
EEDNTLSILERNHTSLCQILQARLQNLMLISRLWTDGDIKAAVETAGSMADQSVFVDLMN
VLAFKQSLWNLDLCGVVLPLIKKLFSSNYECYIQTASSSLKLILSNFSQLIKSTLSTPPG
ALGVDLSREERYNKCDKCYKQLLLIKNVVSERTTTSGRIGVICRELTIALRIIDM
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatccaaagagatcatggaagctacaggagtttgtagctcacagtgcaaatgta
acatgtttagctatgggaccagcctcaggaagagtgatggttactggtggtgaagataaa
aaagtgaatatgtgggctgttggaaaacctaatgttattcttagtttatcaggccatact
tcaacagttgaatgtgttcaatttaataattctgaagaacttgtttgtgctggatctcag
tcaggctcacttaaaatttgggacttggaagctgcaaaaattgtgcgcacactcaccggg
cataaagcaaacattaaatgtttggattttcacccgtatggggaatttgttgcttcagga
tcattagatactacagttcgtttatgggatgttcgtagaaaaggttgtattgtcagttac
aagggtcatactaatgcaataaatcatttgaaattcagtcctgacgggagatgggtcata
tcagccggtgaagatggaatggtcaaactctgggatttaaatgccggaaagctactagct
gattttattcttcatgctggacctgttaactgtgttgaatttcacccaagagaatttcta
gtggctactggatcttctgacagaactgttaagttttgggacttggaaacatttggttta
gtttcttctactgatgtggaagctagtgctgttagaactatttgttttcatcctgatgga
tcgtgcctcttcagtggaggacttgattcccttagggtttatgcatgggaaccaagttgt
tgttatgatgctcaaacactgggatggggcaaggttgcaggaatggctttctccaccaac
caactgattggtgcatcttttcaatctactaatgtatctgtttgggttgcaaacatgctg
gatttggaagaaatcatttctaggagtgccatgcaaccaccttttgaaaaaattgatgtt
aaggaaaaagaacctgtaaaacatgtggagtcagtgttagataaaaaacaaagtccccaa
cgaaagtcatttaatacaagaccaaaaacatcatctaccaaaccaaaaccatcaaaagac
tctcaagtgcttccggatgctgttgtgcaaaaaattaatgatcccaatattaattatgaa
gcagtttttaatccactaagtgcacttagtcgatctccaaaacttaataaaaaaaatgtt
caaccttttgcagtaccaaatgaagatcctcaatcatcaggacaagtagattcttcaatt
aagcctttagagaagttgccacctccagttaagcagtcagctcctatggttgttccggta
caactgcctcctaaacaacctgtttcttacatgccaataaatcgtcatcaagctttaatt
gagccatctcaacaaacttacgttgttacaaatgctgaagcttcaaatgctccatctact
tattatccacagcaacttccttctaacgactatccaattcagtaccaacatcaaccacgt
gtttctcaacctatacgaaaacagtcagctcagcaaggtccagctttaataaaagaaatg
gataatttgaatttggataatttttcacaggttgaagaaagcagtaaattaatgaaaaat
gaagaagataatacattgagtattcttgaacgaaatcatacttctttgtgtcaaatattg
caagcaaggttgcagaacttgatgcttattagtaggctatggacagatggggatataaag
gctgctgtagaaactgctggaagtatggctgatcaatcagtttttgttgatttaatgaat
gtcttggcatttaagcagtcactttggaatttagatttatgtggtgtcgttttaccttta
ataaaaaaattattttcaagcaattatgaatgctatattcaaacagcaagctcatcactg
aaacttatactcagtaatttctcacaactaattaagagcacattgagtactcctccaggt
gctttgggtgtggatctttcaagagaagaaaggtataacaaatgcgacaaatgctataaa
caacttctgctcattaaaaatgttgttagcgaaaggacgactacatctggtcgcataggt
gtaatatgtcgtgagttaacgattgcgttgcgcatcattgatatgtga
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