Hydra vulgaris (swiftwater hydra): 100200908
Help
Entry
100200908 CDS
T01080
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100200908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100200908
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100200908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Cuticle_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
100200908
NCBI-ProteinID:
XP_047127290
LinkDB
All DBs
Position
3:complement(51768853..51862508)
Genome browser
AA seq
929 aa
AA seq
DB search
MAEVQPCQEMSFENIGEHGFVAYLNNLGEKPNTTVRFFDRGEFYTVHNDDAIFAAKELFK
TQSVIKELGSGNKKILSVALSKNNFEKFLRELLLIRQYRVELYRNKTGKSNQWDLVGKAS
PGNLQQFEEMLFGNNEMSDMAVILSLKVSSNENQKLIGAAFVDLTERILNVCEFCDNDQF
TNLEAFLLQVGVKECVITHQDCSDNGGKLQQVLQRSNVLITERKKSSEFQSKDIHQDLNR
LLKTSYGSSTALREVDLLQAMMCLSAIIKYLELLSDESVFNQFSIKIFDLNQYMRLDAGA
IKALNVMPSVDDGNNKSMSVFGLLNMCRTSQGQRLLAQWVKQPLLDHKKIEERLDIVDAF
FNRSDTRKTIQDTYLKKMPDLTRISKKFSRKKASLQDCVRVYQAIKQLPYLLSALDSYEG
DYKVTITDVFCKPLKDLISDFSKYIELIETTVDLEDVENHEYMIKAEFDSSLQDCKTTMN
EISEQLNDSLDDAARVLGLDAGKTIKLESNSQIGHFFRVTLKEEKVLRSCKKFTTIETRK
DGVRFTNSTLSELSNAYRTQKASYNELQTQLANEVIKIASGYADPMNVLSDLVAHLDVLL
SFSLVASQAPIPFVRPKVYPLGSDKIILIGSRHPCMEVQDDISFIANDVKLVKEEAEFLV
ITGPNMGGKSTYIRQIAVITLMAQIGSFVPCDQAEISIVKSIMARVGAGDSQMKGVSTFM
SEMLETASILNAADKNSLIIIDELGRGTSTYDGFGLAWAISEYIATKINAFCLFATHFHE
LTTLADEISTVKNFHVTALTTSDRLTLLYRVKPGVCDQSFGIHVAEIADFPKHVIEFAKQ
KAKELEDFHVYRNGDSDAFGEDSTIEDVAKRRRMDKKASETIISELLMKLKNIPTENRSD
EEIIAEIDLIKKHAMLSGNPYVIDLLDSY
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggtacagccatgtcaagaaatgtcttttgaaaatattggagagcatggtttt
gtagcatatttaaataaccttggagaaaaaccaaatacaacagttcgcttttttgataga
ggggagttttatacagtgcacaatgatgatgctatttttgctgcaaaagagctttttaaa
actcaatccgttattaaagagcttggatcaggtaacaaaaagattttatcagtggctctg
agtaaaaataattttgaaaagtttttacgggaattacttctcattcgtcaatacagagtt
gaactttatagaaataaaactggaaaatctaaccaatgggaccttgttggaaaggcttca
ccgggaaatttgcagcaatttgaagaaatgctttttggtaataatgaaatgtctgacatg
gctgttattttgagcttaaaagtttcaagcaatgaaaatcaaaaattaataggagcagca
tttgttgaccttactgaaagaatattgaatgtttgtgagttttgtgataatgatcagttt
actaacctagaggcatttttacttcaagttggtgttaaagaatgtgttatcactcatcag
gattgttctgataatggtggaaaactacaacaagttttacaacgttcaaatgttttgata
actgagcgaaaaaaaagtagtgaatttcagtcaaaagatatccatcaagatcttaacaga
cttttaaaaacttcttatggttcgagcactgcattacgtgaagtagatttgttgcaagca
atgatgtgtttgtcagctattataaaatatttagagcttttatctgatgagtctgtgttc
aatcaattttccataaaaattttcgatttaaatcagtatatgcgtcttgatgctggagcc
attaaagctttgaatgtaatgccttcagttgatgatggcaataacaaatcaatgagtgtt
tttggattgttgaacatgtgtcgcacaagccaaggccaacgtttactagcccaatgggta
aagcaaccattacttgatcataagaaaattgaagaaagattagacattgttgatgcattt
tttaacagaagtgatactcgaaagactattcaggatacatatttaaaaaagatgcctgat
ttgacacgcatttcaaagaagttctcaagaaaaaaagcatctcttcaagattgtgtacga
gtttatcaagcaattaagcagctaccatatttactttctgcattagactcatacgaaggg
gattataaagtaacaataactgatgtattttgtaaaccattaaaagatttgattagtgat
ttttcaaaatatattgaactcatagaaacaactgttgatttagaagatgttgagaatcat
gagtatatgataaaagctgaatttgattcttcattacaagattgtaaaacaactatgaat
gaaatttctgaacaacttaatgattcattagatgatgcagcaagagttttgggtttagac
gctggtaaaacaattaaacttgaatcaaattcacaaattggtcatttttttcgcgtcacg
ttaaaagaagaaaaggttttaagatcatgcaaaaaatttacaaccatagaaaccagaaag
gatggtgtgcgctttactaattccacattatcagagttaagtaatgcttaccgcactcag
aaagcatcttataatgaacttcaaacacaattagcaaatgaagttatcaaaatagcaagt
ggttatgctgatccaatgaatgttttaagtgatcttgttgctcacttagatgttcttctc
agcttttctttggttgcatcccaagctcctattccatttgttcgcccaaaagtttatcca
cttggtagtgacaaaattattttgattggttctcgacatccatgcatggaagttcaagat
gatatctcttttattgcaaatgatgtcaaacttgttaaagaagaagccgaatttctggtt
ataaccgggccaaatatgggtggaaaatcaacttatatccgccaaattgcggtgattact
ttaatggcgcaaataggaagttttgtgccttgtgatcaagctgaaatttcaattgtaaaa
agcattatggcaagagttggtgcaggtgacagtcaaatgaaaggagtttctacatttatg
tcggaaatgctggaaacagcttctatattaaacgcagctgataaaaactcattgataatt
attgatgaacttggtcgaggtacatcaacctatgatggatttggtttggcttgggcgatt
tctgaatatatagcaacaaagataaatgcattttgtctatttgctactcattttcacgaa
ttaacaactcttgctgatgagatatcaaccgttaaaaactttcatgtaacggcactgact
accagcgataggctaactttattgtatagagttaaaccgggtgtttgcgatcagagtttt
ggtatccacgtggctgaaattgctgactttcctaagcacgtcattgagtttgcaaaacaa
aaagccaaagaacttgaggattttcacgtctatcgtaatggggattcagatgcatttggc
gaggattctaccatagaagatgttgccaaaagaagaagaatggataaaaaagctagtgaa
acaataatatcagagttactgatgaaacttaaaaatataccgactgaaaaccgtagtgac
gaagaaataatcgctgaaattgatttgattaaaaagcacgccatgctcagtggaaatccg
tatgttattgatttgttagatagttattag
DBGET
integrated database retrieval system
