Entry |
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Name |
(RefSeq) exosome RNA helicase MTR4
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KO |
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Organism |
hmg Hydra vulgaris (swiftwater hydra)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:hmg00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100201206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:hmg03019]
100201206
03041 Spliceosome [BR:hmg03041]
100201206
03009 Ribosome biogenesis [BR:hmg03009]
100201206
03016 Transfer RNA biogenesis [BR:hmg03016]
100201206
Enzymes [BR:hmg01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100201206
Messenger RNA biogenesis [BR:hmg03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100201206
Spliceosome [BR:hmg03041]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100201206
Complex C
U4/U6.U5 tri-SnRNP related factors
100201206
Ribosome biogenesis [BR:hmg03009]
Eukaryotic type
Pre-60S particles
Helicases
100201206
Transfer RNA biogenesis [BR:hmg03016]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100201206
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
14:complement(22485384..22524447)
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AA seq |
1028 aa
MELDDSLFTIFEGKVPDEEDEEIVVSKKRKYTEIESKSENLESMSKLSDDLPTSDQNIVK
DNEITSTKKIKLDTTSSLDVPCIEIRHLDAAPSCTHEVALPGGFIYEGLPFKPDEPAKKY
PFVLDPFQQEAIRCLDNNQSVLVSAHTSAGKTVIAEYAIAMSLQKRQRVIYTTPIKALSN
QKYREMYEEFQDVGLMTGDVTINPNASVIIMTTEILRSMLYRGSEIMREVAWVVFDEIHY
MRDKERGVVWEETIILLPDNVRHVFLSATIHNARQFAEWIAYLHKQPCHVVYTDFRPTPL
QHYIYPSGGDGLHLVVDEKGDFREENFNKAMSSLQDQSTVEGNAQGKTKKGKGNQTGSNV
YKIVKMIMERNYAPVIIFSFSKKECEGYALQMSKLDFNTAEEKKLVGEVFKNAIDCLSDD
DKKLPQVEHVLPLLKRGIGIHHGGLLPILKEVIEILFSEGLIKALFATETFALGLNMPAR
TVLFTSARKFDGKDYRWITSGEYIQMSGRAGRRGIDERGIVIMIVDEKLEPEIGKGLLKG
QSDPLNSAFRLTYNMVLNLLRLEEINPEFMLEKSFYQFQNYSAIPEMIDKIKRLESKRDA
IEIPNEDSVMSYYKIRQQLKKLSSEMLEYIHQPKYLLPFLQPGRLVHVKNDEDDFDWGTI
VNFQKKSNQKQGSVLDEPIYVVEVLLYCAKTTKKLAGGEVPLPCKPDEKGEMQVVPVLST
LLQAVSSIRLYLPKDLRPSDARHTVYKSLQEVKKRFPDGVPLLDPIEDMNIKDEELKKIV
RKIEALESRLYSHALHKDKDLETVYNLCQKKAAVDQDIKIAKKELKKAKTILQMDELKCR
KRVLRRLGYATAGDVIELKGRVACEISSADELLLTEMIFNGVFNDLTVDQITALLSCFVF
QEKGDEVAKLSETLAGPLRQMKESARRIAKISEEAKMEIDVDEYIDSFKPQMMDVVYAWS
TGSTFADICKMTDVFEGSVIRCMRRLDELLRQMCQAAKAIGNTELENKFSDGITKIKRDI
IFAASLYL |
NT seq |
3087 nt +upstreamnt +downstreamnt
atggagttagacgattctctgtttacaatctttgaaggaaaagtaccagatgaagaagat
gaagagattgttgtttcaaaaaaaagaaaatatactgaaattgaaagcaaatcagaaaat
ttagaatcaatgtcaaaattgtctgatgatctaccgacatcagatcaaaatatagttaaa
gataatgagattacatcaactaaaaaaatcaagttagatacaacaagttctttagatgtt
ccctgcattgaaattcgtcatttagatgctgcaccatcctgtactcatgaagttgcatta
ccaggaggttttatatatgaaggtcttccattcaagcctgatgaaccagctaagaagtac
ccatttgttctggatccatttcaacaagaagcaattagatgcttggataacaaccaatct
gttttagtttcggcacacacttcggctgggaaaactgtgattgctgaatatgctattgcc
atgtctctccaaaaaagacagagagttatttatactaccccaattaaggcgctcagtaat
cagaagtatcgtgaaatgtatgaagagtttcaagatgttggtttaatgactggagatgtc
acaattaatccaaatgcaagtgtgataataatgaccactgaaattttaagaagtatgctg
tatagaggttctgaaataatgcgtgaagttgcttgggttgtatttgatgaaatccattat
atgagagataaagaacgtggagttgtttgggaggaaacaattatattgttaccagacaac
gtacgtcatgtattcttgtctgctacaattcataatgcaaggcagtttgcagagtggatt
gcttatttacacaagcagccatgccatgttgtttacacagattttcgtcctacaccattg
caacattatatatatccatcagggggtgatggtttacatcttgttgttgatgaaaagggt
gattttcgagaagagaacttcaataaagccatgagttctttgcaagatcaatcaacagtt
gaaggaaatgctcaaggaaaaacaaaaaaaggaaaaggaaatcaaactggttcaaatgtc
tataaaattgttaaaatgataatggaacgtaattacgctccagtgatcatctttagtttt
agtaaaaaagagtgtgaaggttatgctttacagatgtctaagcttgattttaacactgct
gaagagaaaaaattggttggagaagtgtttaaaaatgcaattgattgtctttctgatgat
gataaaaagttacctcaagttgaacatgtccttccacttctgaaaagaggtattggtatc
catcatggtggtttgttaccaattctaaaggaagtcattgaaattttattctctgaagga
cttattaaagcactttttgcaacagaaacttttgcgctaggtctaaatatgcctgcacga
acagtattgtttacaagtgcacgaaaatttgatggcaaagattatagatggattacgagt
ggtgaatatatacaaatgagtggacgagctggtagacgtggaattgatgagcgtggcatt
gtcattatgattgtagatgaaaaacttgaacctgaaattggaaaaggattattaaaggga
caatctgatcctttaaacagtgcttttcgtttgacttacaacatggttttaaatctttta
cgtctagaagaaattaatcctgaatttatgttggaaaaatcattttatcaatttcaaaat
tattcggcaataccagaaatgattgataagatcaagaggttagagtcaaaacgtgatgca
atagaaattccaaatgaagattctgttatgagctactataaaattcgtcagcaacttaag
aaactaagttcagaaatgcttgagtatattcaccaacctaagtatttgttaccattctta
cagcctggaagacttgttcatgtaaaaaatgatgaagatgattttgattggggcacaatt
gttaattttcaaaaaaaatccaaccaaaagcagggttcagttctggatgaaccaatctat
gtggtagaagtgttactttattgtgcaaaaactacaaaaaaacttgctggaggcgaggtt
cctctaccttgtaagccagatgaaaagggagaaatgcaggttgttccagtattgagtact
ttacttcaagctgtgagcagtattcgtttgtatttgcctaaagatttacggcctagtgat
gcaagacatactgtttataaatccttacaggaagttaaaaagcgatttcctgatggtgtc
ccactattagatcctattgaagatatgaatatcaaagatgaggagcttaaaaaaatagtc
aggaaaattgaagctcttgaaagtcgtttgtattcccatgctctgcacaaagacaaagac
ttggagacagtttacaacttatgtcaaaaaaaagctgctgtagatcaagatataaaaatt
gcaaaaaaagagttaaaaaaggcaaaaactattttgcagatggatgaattgaaatgtcgc
aagagagtacttagaagattgggttatgcaacagcaggtgatgttattgaacttaagggc
agagttgcttgtgaaattagcagtgccgacgaattacttttaacagaaatgatttttaat
ggtgtatttaatgaccttacagtagatcaaatcactgctttattgagttgctttgttttc
caagaaaaaggagatgaagtagctaaattatcagaaactcttgctggaccattaaggcag
atgaaggagtctgctaggcgaatagcaaaaatttctgaagaagcgaaaatggaaattgat
gtagatgaatatattgactcttttaaaccccagatgatggatgttgtttatgcatggtct
acaggctctacctttgcggatatatgtaaaatgactgatgtttttgaagggagtgttatt
cgttgtatgagacgacttgatgaattacttcgtcaaatgtgtcaagcagcaaaagctatt
ggcaacactgaactagaaaataaattttctgacggaataaccaagattaaaagagacatt
atatttgctgctagtttgtacttgtaa |