KEGG   Hydra vulgaris (swiftwater hydra): 100201206
Entry
100201206         CDS       T01080                                 
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Pathway
hmg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100201206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hmg03019]
    100201206
   03041 Spliceosome [BR:hmg03041]
    100201206
   03009 Ribosome biogenesis [BR:hmg03009]
    100201206
   03016 Transfer RNA biogenesis [BR:hmg03016]
    100201206
Enzymes [BR:hmg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100201206
Messenger RNA biogenesis [BR:hmg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     100201206
Spliceosome [BR:hmg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    100201206
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    100201206
Ribosome biogenesis [BR:hmg03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    100201206
Transfer RNA biogenesis [BR:hmg03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    100201206
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C ResIII nSTAND3 AAA_22 DBC1 ATPase_2
Other DBs
NCBI-GeneID: 100201206
NCBI-ProteinID: XP_047122835
LinkDB
Position
14:complement(22485384..22524447)
AA seq 1028 aa
MELDDSLFTIFEGKVPDEEDEEIVVSKKRKYTEIESKSENLESMSKLSDDLPTSDQNIVK
DNEITSTKKIKLDTTSSLDVPCIEIRHLDAAPSCTHEVALPGGFIYEGLPFKPDEPAKKY
PFVLDPFQQEAIRCLDNNQSVLVSAHTSAGKTVIAEYAIAMSLQKRQRVIYTTPIKALSN
QKYREMYEEFQDVGLMTGDVTINPNASVIIMTTEILRSMLYRGSEIMREVAWVVFDEIHY
MRDKERGVVWEETIILLPDNVRHVFLSATIHNARQFAEWIAYLHKQPCHVVYTDFRPTPL
QHYIYPSGGDGLHLVVDEKGDFREENFNKAMSSLQDQSTVEGNAQGKTKKGKGNQTGSNV
YKIVKMIMERNYAPVIIFSFSKKECEGYALQMSKLDFNTAEEKKLVGEVFKNAIDCLSDD
DKKLPQVEHVLPLLKRGIGIHHGGLLPILKEVIEILFSEGLIKALFATETFALGLNMPAR
TVLFTSARKFDGKDYRWITSGEYIQMSGRAGRRGIDERGIVIMIVDEKLEPEIGKGLLKG
QSDPLNSAFRLTYNMVLNLLRLEEINPEFMLEKSFYQFQNYSAIPEMIDKIKRLESKRDA
IEIPNEDSVMSYYKIRQQLKKLSSEMLEYIHQPKYLLPFLQPGRLVHVKNDEDDFDWGTI
VNFQKKSNQKQGSVLDEPIYVVEVLLYCAKTTKKLAGGEVPLPCKPDEKGEMQVVPVLST
LLQAVSSIRLYLPKDLRPSDARHTVYKSLQEVKKRFPDGVPLLDPIEDMNIKDEELKKIV
RKIEALESRLYSHALHKDKDLETVYNLCQKKAAVDQDIKIAKKELKKAKTILQMDELKCR
KRVLRRLGYATAGDVIELKGRVACEISSADELLLTEMIFNGVFNDLTVDQITALLSCFVF
QEKGDEVAKLSETLAGPLRQMKESARRIAKISEEAKMEIDVDEYIDSFKPQMMDVVYAWS
TGSTFADICKMTDVFEGSVIRCMRRLDELLRQMCQAAKAIGNTELENKFSDGITKIKRDI
IFAASLYL
NT seq 3087 nt   +upstreamnt  +downstreamnt
atggagttagacgattctctgtttacaatctttgaaggaaaagtaccagatgaagaagat
gaagagattgttgtttcaaaaaaaagaaaatatactgaaattgaaagcaaatcagaaaat
ttagaatcaatgtcaaaattgtctgatgatctaccgacatcagatcaaaatatagttaaa
gataatgagattacatcaactaaaaaaatcaagttagatacaacaagttctttagatgtt
ccctgcattgaaattcgtcatttagatgctgcaccatcctgtactcatgaagttgcatta
ccaggaggttttatatatgaaggtcttccattcaagcctgatgaaccagctaagaagtac
ccatttgttctggatccatttcaacaagaagcaattagatgcttggataacaaccaatct
gttttagtttcggcacacacttcggctgggaaaactgtgattgctgaatatgctattgcc
atgtctctccaaaaaagacagagagttatttatactaccccaattaaggcgctcagtaat
cagaagtatcgtgaaatgtatgaagagtttcaagatgttggtttaatgactggagatgtc
acaattaatccaaatgcaagtgtgataataatgaccactgaaattttaagaagtatgctg
tatagaggttctgaaataatgcgtgaagttgcttgggttgtatttgatgaaatccattat
atgagagataaagaacgtggagttgtttgggaggaaacaattatattgttaccagacaac
gtacgtcatgtattcttgtctgctacaattcataatgcaaggcagtttgcagagtggatt
gcttatttacacaagcagccatgccatgttgtttacacagattttcgtcctacaccattg
caacattatatatatccatcagggggtgatggtttacatcttgttgttgatgaaaagggt
gattttcgagaagagaacttcaataaagccatgagttctttgcaagatcaatcaacagtt
gaaggaaatgctcaaggaaaaacaaaaaaaggaaaaggaaatcaaactggttcaaatgtc
tataaaattgttaaaatgataatggaacgtaattacgctccagtgatcatctttagtttt
agtaaaaaagagtgtgaaggttatgctttacagatgtctaagcttgattttaacactgct
gaagagaaaaaattggttggagaagtgtttaaaaatgcaattgattgtctttctgatgat
gataaaaagttacctcaagttgaacatgtccttccacttctgaaaagaggtattggtatc
catcatggtggtttgttaccaattctaaaggaagtcattgaaattttattctctgaagga
cttattaaagcactttttgcaacagaaacttttgcgctaggtctaaatatgcctgcacga
acagtattgtttacaagtgcacgaaaatttgatggcaaagattatagatggattacgagt
ggtgaatatatacaaatgagtggacgagctggtagacgtggaattgatgagcgtggcatt
gtcattatgattgtagatgaaaaacttgaacctgaaattggaaaaggattattaaaggga
caatctgatcctttaaacagtgcttttcgtttgacttacaacatggttttaaatctttta
cgtctagaagaaattaatcctgaatttatgttggaaaaatcattttatcaatttcaaaat
tattcggcaataccagaaatgattgataagatcaagaggttagagtcaaaacgtgatgca
atagaaattccaaatgaagattctgttatgagctactataaaattcgtcagcaacttaag
aaactaagttcagaaatgcttgagtatattcaccaacctaagtatttgttaccattctta
cagcctggaagacttgttcatgtaaaaaatgatgaagatgattttgattggggcacaatt
gttaattttcaaaaaaaatccaaccaaaagcagggttcagttctggatgaaccaatctat
gtggtagaagtgttactttattgtgcaaaaactacaaaaaaacttgctggaggcgaggtt
cctctaccttgtaagccagatgaaaagggagaaatgcaggttgttccagtattgagtact
ttacttcaagctgtgagcagtattcgtttgtatttgcctaaagatttacggcctagtgat
gcaagacatactgtttataaatccttacaggaagttaaaaagcgatttcctgatggtgtc
ccactattagatcctattgaagatatgaatatcaaagatgaggagcttaaaaaaatagtc
aggaaaattgaagctcttgaaagtcgtttgtattcccatgctctgcacaaagacaaagac
ttggagacagtttacaacttatgtcaaaaaaaagctgctgtagatcaagatataaaaatt
gcaaaaaaagagttaaaaaaggcaaaaactattttgcagatggatgaattgaaatgtcgc
aagagagtacttagaagattgggttatgcaacagcaggtgatgttattgaacttaagggc
agagttgcttgtgaaattagcagtgccgacgaattacttttaacagaaatgatttttaat
ggtgtatttaatgaccttacagtagatcaaatcactgctttattgagttgctttgttttc
caagaaaaaggagatgaagtagctaaattatcagaaactcttgctggaccattaaggcag
atgaaggagtctgctaggcgaatagcaaaaatttctgaagaagcgaaaatggaaattgat
gtagatgaatatattgactcttttaaaccccagatgatggatgttgtttatgcatggtct
acaggctctacctttgcggatatatgtaaaatgactgatgtttttgaagggagtgttatt
cgttgtatgagacgacttgatgaattacttcgtcaaatgtgtcaagcagcaaaagctatt
ggcaacactgaactagaaaataaattttctgacggaataaccaagattaaaagagacatt
atatttgctgctagtttgtacttgtaa

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