Hydra vulgaris (swiftwater hydra): 100201206
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Entry
100201206 CDS
T01080
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100201206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100201206
03041 Spliceosome [BR:
hmg03041
]
100201206
03009 Ribosome biogenesis [BR:
hmg03009
]
100201206
03016 Transfer RNA biogenesis [BR:
hmg03016
]
100201206
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100201206
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100201206
Spliceosome [BR:
hmg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100201206
Complex C
U4/U6.U5 tri-SnRNP related factors
100201206
Ribosome biogenesis [BR:
hmg03009
]
Eukaryotic type
Pre-60S particles
Helicases
100201206
Transfer RNA biogenesis [BR:
hmg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100201206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
DBC1
ATPase_2
Motif
Other DBs
NCBI-GeneID:
100201206
NCBI-ProteinID:
XP_047122835
LinkDB
All DBs
Position
14:complement(22485384..22524447)
Genome browser
AA seq
1028 aa
AA seq
DB search
MELDDSLFTIFEGKVPDEEDEEIVVSKKRKYTEIESKSENLESMSKLSDDLPTSDQNIVK
DNEITSTKKIKLDTTSSLDVPCIEIRHLDAAPSCTHEVALPGGFIYEGLPFKPDEPAKKY
PFVLDPFQQEAIRCLDNNQSVLVSAHTSAGKTVIAEYAIAMSLQKRQRVIYTTPIKALSN
QKYREMYEEFQDVGLMTGDVTINPNASVIIMTTEILRSMLYRGSEIMREVAWVVFDEIHY
MRDKERGVVWEETIILLPDNVRHVFLSATIHNARQFAEWIAYLHKQPCHVVYTDFRPTPL
QHYIYPSGGDGLHLVVDEKGDFREENFNKAMSSLQDQSTVEGNAQGKTKKGKGNQTGSNV
YKIVKMIMERNYAPVIIFSFSKKECEGYALQMSKLDFNTAEEKKLVGEVFKNAIDCLSDD
DKKLPQVEHVLPLLKRGIGIHHGGLLPILKEVIEILFSEGLIKALFATETFALGLNMPAR
TVLFTSARKFDGKDYRWITSGEYIQMSGRAGRRGIDERGIVIMIVDEKLEPEIGKGLLKG
QSDPLNSAFRLTYNMVLNLLRLEEINPEFMLEKSFYQFQNYSAIPEMIDKIKRLESKRDA
IEIPNEDSVMSYYKIRQQLKKLSSEMLEYIHQPKYLLPFLQPGRLVHVKNDEDDFDWGTI
VNFQKKSNQKQGSVLDEPIYVVEVLLYCAKTTKKLAGGEVPLPCKPDEKGEMQVVPVLST
LLQAVSSIRLYLPKDLRPSDARHTVYKSLQEVKKRFPDGVPLLDPIEDMNIKDEELKKIV
RKIEALESRLYSHALHKDKDLETVYNLCQKKAAVDQDIKIAKKELKKAKTILQMDELKCR
KRVLRRLGYATAGDVIELKGRVACEISSADELLLTEMIFNGVFNDLTVDQITALLSCFVF
QEKGDEVAKLSETLAGPLRQMKESARRIAKISEEAKMEIDVDEYIDSFKPQMMDVVYAWS
TGSTFADICKMTDVFEGSVIRCMRRLDELLRQMCQAAKAIGNTELENKFSDGITKIKRDI
IFAASLYL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggagttagacgattctctgtttacaatctttgaaggaaaagtaccagatgaagaagat
gaagagattgttgtttcaaaaaaaagaaaatatactgaaattgaaagcaaatcagaaaat
ttagaatcaatgtcaaaattgtctgatgatctaccgacatcagatcaaaatatagttaaa
gataatgagattacatcaactaaaaaaatcaagttagatacaacaagttctttagatgtt
ccctgcattgaaattcgtcatttagatgctgcaccatcctgtactcatgaagttgcatta
ccaggaggttttatatatgaaggtcttccattcaagcctgatgaaccagctaagaagtac
ccatttgttctggatccatttcaacaagaagcaattagatgcttggataacaaccaatct
gttttagtttcggcacacacttcggctgggaaaactgtgattgctgaatatgctattgcc
atgtctctccaaaaaagacagagagttatttatactaccccaattaaggcgctcagtaat
cagaagtatcgtgaaatgtatgaagagtttcaagatgttggtttaatgactggagatgtc
acaattaatccaaatgcaagtgtgataataatgaccactgaaattttaagaagtatgctg
tatagaggttctgaaataatgcgtgaagttgcttgggttgtatttgatgaaatccattat
atgagagataaagaacgtggagttgtttgggaggaaacaattatattgttaccagacaac
gtacgtcatgtattcttgtctgctacaattcataatgcaaggcagtttgcagagtggatt
gcttatttacacaagcagccatgccatgttgtttacacagattttcgtcctacaccattg
caacattatatatatccatcagggggtgatggtttacatcttgttgttgatgaaaagggt
gattttcgagaagagaacttcaataaagccatgagttctttgcaagatcaatcaacagtt
gaaggaaatgctcaaggaaaaacaaaaaaaggaaaaggaaatcaaactggttcaaatgtc
tataaaattgttaaaatgataatggaacgtaattacgctccagtgatcatctttagtttt
agtaaaaaagagtgtgaaggttatgctttacagatgtctaagcttgattttaacactgct
gaagagaaaaaattggttggagaagtgtttaaaaatgcaattgattgtctttctgatgat
gataaaaagttacctcaagttgaacatgtccttccacttctgaaaagaggtattggtatc
catcatggtggtttgttaccaattctaaaggaagtcattgaaattttattctctgaagga
cttattaaagcactttttgcaacagaaacttttgcgctaggtctaaatatgcctgcacga
acagtattgtttacaagtgcacgaaaatttgatggcaaagattatagatggattacgagt
ggtgaatatatacaaatgagtggacgagctggtagacgtggaattgatgagcgtggcatt
gtcattatgattgtagatgaaaaacttgaacctgaaattggaaaaggattattaaaggga
caatctgatcctttaaacagtgcttttcgtttgacttacaacatggttttaaatctttta
cgtctagaagaaattaatcctgaatttatgttggaaaaatcattttatcaatttcaaaat
tattcggcaataccagaaatgattgataagatcaagaggttagagtcaaaacgtgatgca
atagaaattccaaatgaagattctgttatgagctactataaaattcgtcagcaacttaag
aaactaagttcagaaatgcttgagtatattcaccaacctaagtatttgttaccattctta
cagcctggaagacttgttcatgtaaaaaatgatgaagatgattttgattggggcacaatt
gttaattttcaaaaaaaatccaaccaaaagcagggttcagttctggatgaaccaatctat
gtggtagaagtgttactttattgtgcaaaaactacaaaaaaacttgctggaggcgaggtt
cctctaccttgtaagccagatgaaaagggagaaatgcaggttgttccagtattgagtact
ttacttcaagctgtgagcagtattcgtttgtatttgcctaaagatttacggcctagtgat
gcaagacatactgtttataaatccttacaggaagttaaaaagcgatttcctgatggtgtc
ccactattagatcctattgaagatatgaatatcaaagatgaggagcttaaaaaaatagtc
aggaaaattgaagctcttgaaagtcgtttgtattcccatgctctgcacaaagacaaagac
ttggagacagtttacaacttatgtcaaaaaaaagctgctgtagatcaagatataaaaatt
gcaaaaaaagagttaaaaaaggcaaaaactattttgcagatggatgaattgaaatgtcgc
aagagagtacttagaagattgggttatgcaacagcaggtgatgttattgaacttaagggc
agagttgcttgtgaaattagcagtgccgacgaattacttttaacagaaatgatttttaat
ggtgtatttaatgaccttacagtagatcaaatcactgctttattgagttgctttgttttc
caagaaaaaggagatgaagtagctaaattatcagaaactcttgctggaccattaaggcag
atgaaggagtctgctaggcgaatagcaaaaatttctgaagaagcgaaaatggaaattgat
gtagatgaatatattgactcttttaaaccccagatgatggatgttgtttatgcatggtct
acaggctctacctttgcggatatatgtaaaatgactgatgtttttgaagggagtgttatt
cgttgtatgagacgacttgatgaattacttcgtcaaatgtgtcaagcagcaaaagctatt
ggcaacactgaactagaaaataaattttctgacggaataaccaagattaaaagagacatt
atatttgctgctagtttgtacttgtaa
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