Hydra vulgaris (swiftwater hydra): 100202005
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Entry
100202005 CDS
T01080
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 2
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hmg01009
]
100202005
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100202005
Protein phosphatases and associated proteins [BR:
hmg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100202005
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
100202005
mRNA cycle factors
Stress granule specific factors
100202005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
DND1_DSRM
Dicer_dsRBD
DSRM_2
Motif
Other DBs
NCBI-GeneID:
100202005
NCBI-ProteinID:
XP_002167363
UniProt:
T2M471
LinkDB
All DBs
Position
12:21520728..21590118
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AA seq
493 aa
AA seq
DB search
MASNSPTSILYELAKTNRLLPVYKVVADSGPPHQKTFQVHLYVGCHGPFEGIGNSLKSAK
NAAASKAIVEGPPNLYLNPTVELNILSMKNKEQVVYKELESPFPQQKLETLFPPRDFIHG
VHRARVKNTNRLCKMSVTVCGRTYIGEGKSKSEARGNTACLALLDLKPILLERAKHIEQE
KVQNKTVNLEKNIATSNIYISLLYEKAVLHNFQIHFTTIHESGPAHLRFFHVKCEVNDKE
TVGEAMGKKNAKNIAAEKMLKILEEMNLPIPPKKEKPKKKKKEKKISTKTNPVTYLTQLI
QLRKEPPVTYTMKAIPGDQSGALLFQIEAAITNFKSVGCGHSKREAKANAAMNLLKSLGI
DLDELEAQKTRSLHEDELVKDMNEKFSTSSKAVGSSISRSIDTSARLEKNFDSAKQKLEY
IAQLEGFQLMFNDFVKNKKDNRGEFSSNLSIFTTPPEVYQGSGDSVEASRENASSKALKA
MFKNAEKTLETKT
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtaattcaccaaccagtatcttatatgaacttgcaaaaactaatagattgttg
ccagtttacaaagttgttgcagactctggacctccacatcaaaaaacatttcaagttcat
ttgtatgttggctgtcatggtccattcgaaggtattggtaatagtttaaaaagtgctaaa
aacgctgctgcatctaaagctattgtagaaggtccacctaatctttatttaaatcctaca
gtagaattgaatattctttccatgaaaaataaagagcaagttgtatataaggaacttgaa
agtccatttcctcagcaaaagttagaaactttgtttcctccacgtgattttattcatgga
gttcacagagccagagttaaaaatactaatagattgtgcaagatgtctgtaactgtttgt
ggaagaacatacattggagaaggtaaatcaaaatctgaagcacggggaaatactgcttgt
ctcgctctattagatttaaaaccaattttactagagcgtgccaaacatatagagcaagaa
aaagttcagaacaagacagttaatcttgaaaaaaatattgctacttcaaatatatatatt
tcacttttgtatgaaaaagctgtgttgcataattttcaaatacattttactactattcat
gaatcaggtcctgctcatcttagattttttcatgtcaagtgtgaggttaatgataaagag
actgtaggtgaagccatgggcaaaaagaatgcaaagaatattgctgctgaaaaaatgttg
aaaattttagaggagatgaacttacccatcccccctaaaaaagaaaagcctaaaaaaaag
aaaaaggaaaaaaaaatttcaacaaaaactaacccggttacatatttaacacaactgatc
cagttaagaaaagaacctcctgtaacatatacaatgaaagctattcctggagatcaatct
ggtgccttgctttttcaaattgaagctgcgattacaaattttaaatctgttgggtgtggt
cattctaagagagaggcaaaggcaaatgctgctatgaatcttctaaaaagtctgggaatc
gacttggatgaattggaggcacaaaaaactagaagtttgcatgaagatgaattagtaaaa
gatatgaatgagaaattctcaacgtcgagtaaagctgttggaagttcgattagtcgttct
attgatacatctgcaagattagaaaagaattttgattcagcaaaacaaaaattagaatac
attgctcaacttgaaggtttccagttgatgtttaatgactttgttaagaacaaaaaagat
aatcgtggggaattttcatcaaacctttctatttttaccacaccgccagaggtttatcaa
ggatcaggagattctgtagaggcatcaagagaaaatgcttcgagcaaagcactgaaggct
atgtttaaaaatgcggaaaaaacattggaaactaagacatag
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