Hydra vulgaris (swiftwater hydra): 100202359
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Entry
100202359 CDS
T01080
Name
(RefSeq) RRP12-like protein isoform X1
KO
K14794
ribosomal RNA-processing protein 12
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hmg03009
]
100202359
Ribosome biogenesis [BR:
hmg03009
]
Eukaryotic type
90S particles
Other 90S particles
100202359
Pre-60S particles
Other pre-60S particles
100202359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
HEAT_RRP12_N
HEAT_GCN1
HEAT_Maestro
Katanin_con80
Motif
Other DBs
NCBI-GeneID:
100202359
NCBI-ProteinID:
XP_047128483
LinkDB
All DBs
Position
3:23307689..23387797
Genome browser
AA seq
1274 aa
AA seq
DB search
MAGNLHYDVNCQLGKARGVYILKMKAKSKSKKVFKKGDQCVQNPKSRKFRDQVKKNVFTQ
RSSKKGLTLQALEKHDEEIEDFGDLAISEKTAESTKSTAFSISGLTDCSNITFSAVLDKW
HSPNSLDQEKCAILAAVTEVIRSKGGSETESEYFGALMTTLASNDGEDSATAITYLLSLV
LKKLPVALLKMKFSQSSKLFMELLSKYYENGRAALLISLLECLTIILSAVEAAVWHESST
QQCFQALLTFAIHSKPRVRKAAHSNIKSLLKIAVANNKNHQSAAIAAKYCEETLKQQDSK
ISSNHILNLLKQCMGMFSSENLKILCEAVLNTMSSNDLIVKTNSMQTLYALFESHPPEEN
LTLELNGKIINALNDFQPSVNDVHVSEGWLVMLAAAHSNLSLLNRKSCLNALPKFFSSAL
SFFSSEHKAVAKAAADAMKLTSQNCLENIQDELTEDIKLENSSFKQIIKIMESGLRYKYQ
PLWNVVLQCLQYLYATFGSTCRSVMIKGVASLIDLHDNPDFPFKNDLLNTIGAAFKGMGP
KAIILERPLELLRNDDVCQFPRAWLLPVMKDNIQNSELKFFISYFLPMAAKLRQKALKCR
AINQDLEAKVYETLQSQIWALLPGFCNNPSDLSSEFKNIAMILGTALTEQKELRSVVLQA
LRMLISKTVDETDLKAIGYYSKNYLPILFNLYTSDDKDCQAVSLSVLETIKMFLHVTDKN
LIKTFAKKLIEKLADDSSADKKHHLMDLAVAMVKYSDEEVVNQLFSIAVVNLDNKDKSMQ
KKGYRILEELCDSNSEAAKDLVKDKFTELKKIFVDSLSSAVPSSKAPRLRCISLLIKKLD
SSQKDFLITVIPEVILCTKEVGVKAKTAAFDLLVDIGTSLVFLSSKPKEECIEEYFKIVM
AGLAASPHMISATLLAFTKLIFEYRYCLSSKLVGSILDTAISLLKSKSREVIKSSLLFIR
AVVKIFDSNELIEHLPTLIPNLFAWNVKSSGAYRQQVRVILERLDKKCGYHLVRNFVPDE
HKRFIIQIHKTLMRTKRQKEAKRNQDEEVDDEEEKASKKGATLWQDVLADSDNEENKPAP
GIKKPNKKGKENKSWILEGEDEVDLLDSKVAKNIVAFKPKQAKQKFSFPLNNDGKLLIDD
EDNKNKDEDTPLNIGATDILSGFDKTPKQIKLGKRKHLEDMPENENSLSTYKPGGAGIHR
DITKKKNYGEEYKAKKARGDVKLKGKPDPFAYVPLDRQTMNKRKKSKLIGRFDGLVKAAR
RGAIKGSKNKRKKN
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaatctgcattacgatgtaaattgtcaactgggaaaagcacgtggcgtttac
attttaaaaatgaaagcaaagtctaaaagtaagaaggtatttaaaaaaggagatcaatgt
gtacaaaaccctaaaagtagaaaatttagagaccaagttaagaaaaatgtttttacgcaa
aggtcttcaaaaaaaggactgacattacaagctttagaaaaacacgatgaggaaattgaa
gattttggagaccttgctattagtgaaaaaactgcagaatcaacaaagtctacagctttt
tctataagcggacttactgattgctctaacataacttttagtgctgttctagataaatgg
cactctcctaattcactagatcaagagaaatgtgccatactggcagctgtaacagaggtt
atcagaagcaaaggtggatctgagacggaatcagaatattttggtgctcttatgactaca
ttagcatctaatgatggagaagactctgcaacagcaataacatatcttcttagtttagta
ttaaaaaagctgccagtggcacttttaaaaatgaagttttcccaatcttctaaattattt
atggaactgctttctaaatattatgaaaatggtcgtgcagcactcttaataagtctacta
gaatgcttgactatcattttgagtgcagttgaagcagcagtatggcatgagtcttcaacc
caacaatgttttcaggctttgcttacattcgctattcacagtaaaccaagagtaagaaaa
gctgctcattctaacattaagtcgttgttgaaaattgctgtagctaacaacaaaaatcac
caatctgcagcaattgctgcaaaatattgtgaagaaactttgaaacaacaagattcgaaa
atttcctccaatcatattttaaacttactgaaacagtgtatgggaatgttttcatctgaa
aatttaaaaattttatgtgaagcagttttaaacactatgtcttcaaatgacttgattgtc
aaaacaaattctatgcaaacactttatgccttatttgaaagtcatccacccgaagaaaac
cttactttggagctaaatggtaaaatcattaatgctttaaatgattttcaacccagtgtt
aatgatgttcatgtttctgaaggatggttagttatgctggctgcagcacactccaacctc
tcattattgaatagaaaatcgtgtttaaatgcattaccaaagttctttagctcagcttta
tcatttttttcatcagagcataaagctgttgctaaggctgcagcagatgcaatgaagtta
actagtcaaaattgcttggaaaatattcaagacgaacttactgaggatataaaattagaa
aattcttcatttaaacaaatcattaagattatggaatcaggtttgcgttataaatatcaa
ccattatggaatgttgttttacaatgtttgcaatatttatatgcaacattcggaagcaca
tgccggtcagtaatgatcaaaggagttgcatctcttattgacttacatgataatcctgat
tttccatttaaaaatgaccttctcaataccattggtgctgctttcaagggaatgggacct
aaggcgattatactagaacgtcctttagaattgttacgaaatgatgatgtatgtcaattc
ccaagagcctggttacttcctgtaatgaaagacaatatccaaaatagtgaattaaagttt
tttatttcttactttttacctatggcagccaagttaagacaaaaagctttaaaatgtaga
gcaataaaccaagatctcgaagcaaaagtttatgaaacactccaatcccagatatgggct
ttattacctggattttgtaacaacccttctgacctttcttcggagttcaaaaacattgct
atgattttgggaactgcactaactgaacaaaaagaattgcgatctgttgttttgcaagcc
ttgagaatgctcatcagtaaaacagttgatgaaactgacctgaaagcaatcggatattac
tcaaaaaactacttgcctatattgttcaatctatacacatctgatgataaagactgtcaa
gctgtatcgctttctgttttagaaacaatcaaaatgtttcttcatgttacagacaaaaat
ctcatcaagacttttgctaagaagctgattgaaaaattagcagatgatagctctgctgac
aaaaagcatcatttaatggatttagctgttgccatggtcaagtattctgatgaagaagtt
gttaatcaattgttttccattgctgtagtcaaccttgataataaagataaaagtatgcaa
aagaaaggttatcgtatactagaagaattgtgtgatagtaattcagaagctgcaaaagac
ttagttaaagataagtttactgaattaaagaaaatatttgtggattctctttcaagtgca
gtaccatcatcaaaagctcctcggttgcgctgcatttcattacttataaaaaagcttgat
tcaagtcaaaaggattttttgataacagtaatccctgaggtaatactttgtacaaaagaa
gttggtgttaaagcaaaaacagcagcatttgatcttttggttgatattggaacatcactt
gttttcttaagcagtaaaccaaaagaagaatgtattgaagaatattttaagatagtaatg
gctggattggctgcttcaccccacatgataagtgcaacactgttagcattcaccaaactt
atttttgaatatagatattgtctttcttcaaagttggttggttctatacttgacactgcc
atatcattactcaagtcaaaatccagagaagtgatcaaatctagcttgctgttcatacgt
gctgttgtcaaaatttttgactcaaatgaattgattgagcacttaccaactttgatacca
aatttatttgcatggaatgtaaaaagcagtggtgcttatcgccaacaagtacgggtaata
ttagaacgcctggataaaaaatgtgggtaccatttagttagaaattttgtacctgacgaa
cataagcgatttattatacaaattcataaaacccttatgagaaccaaacgccaaaaagaa
gcaaagagaaaccaggatgaagaagttgatgatgaagaagaaaaagcatctaaaaaagga
gctactttatggcaggatgtgctagctgactctgataatgaagaaaataaaccggctcct
ggtattaaaaaaccaaataaaaagggaaaggaaaacaaaagttggattcttgagggtgaa
gatgaagtagacttattagactcgaaagttgctaaaaatattgttgcttttaaaccaaag
caagcgaagcaaaagtttagttttccacttaacaatgacgggaaattattaattgatgat
gaagacaataaaaataaagatgaagatacaccactaaacataggtgctacagacattcta
tcaggttttgataaaactcctaaacaaataaaactgggaaaacgtaaacatcttgaagat
atgccagaaaatgaaaattctctttctacatataaacctggtggtgctggaattcatcgt
gatataactaaaaagaaaaactatggagaagagtacaaggctaagaaagcgcgtggtgat
gtaaaattgaaaggaaaaccggatccatttgcatacgttccacttgatcgtcaaactatg
aacaaaaggaaaaaatctaaactaataggacggtttgatggcttagtaaaggctgctcgt
cgtggggcgattaaaggaagtaaaaataaaagaaagaagaattga
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