Hydra vulgaris (swiftwater hydra): 100202489
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Entry
100202489 CDS
T01080
Name
(RefSeq) coatomer subunit alpha-like
KO
K05236
coatomer subunit alpha
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hmg04131
]
100202489
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hmg04147
]
100202489
Membrane trafficking [BR:
hmg04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
100202489
Exosome [BR:
hmg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100202489
Exosomal proteins of bladder cancer cells
100202489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_Nup120_160
eIF2A
zf-RING_4
zf-Tbcl_FmdE
Motif
Other DBs
NCBI-GeneID:
100202489
NCBI-ProteinID:
XP_047126355
LinkDB
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Position
2:complement(52559241..52589734)
Genome browser
AA seq
1221 aa
AA seq
DB search
MLTKFETKSARVKGLAFHSKRPWVLASLHNGVIQLWDYRMCTLLDRFDEHDGPVRGIDFH
ENQPLFVSGGDDYKIKVWNYKQKKCIFTLLGHLDYIRTTFFHHEYPWIVSCSDDQTIRIW
NWQSRNCINVLTGHNHYVMCAQFHKTEDYIVSASLDQTVRVWDISGLRKKFASPGTKDRD
DTSVKNPGQIDLFGHADAVVKHVLEGHDRGVNWVTFHPTMPLIVSAADDRQVKLWRMNES
KAWEVDTCRGHYNNVSSVIFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRENDRYWIL
AAHPTLNLFAAGHDSGMVVFKLERERPAYTVHQNTLYYVKDRYLRIYEFGSSIDKPIMQF
KKGAGRPNPVHLVYNPAEQCILLTYGTSSSVDSQVYELHALPKDIKSSDPEVSEGKKAAG
ISAVWVARNRFAVLDKQQNVVIKNLKNEVTKKVTTPACDMIFYAGTGSLLLRDAEQIMFF
DVQQKRVMASIKIAKCRYVVWSSDMNFVALIAKHTISICNRKMENLSSVHESVKIKGGAW
DDSGVFVYTTSNHIKYTLTNGDSGIIRTLDLPIYITRVKGSSVYCLDRDCKTKVLNIDPT
EFKFKLALVNHRYDEVLNMVRNAKLVGQSIISYLQKKGYPEVALHFVKDQKTRFGLALEC
GNLEVALEAAKSLEDKLCWEKLSEMALKQGNHQVVEMCYQRTKNFDRLSFLYLTTGNTDK
LRKMLKISEIRKDVSGHLHNALYCGDIRERIKVLKQVGQGSLAYLTAATHGLTEECAEIQ
TLFNLDPEKLPAINPNAKLLRPPVPILLNEGNWPLLAVSKTIFEGSTPLKDAPMSVSAVQ
GDFGEEGEGWGDSDLVLEEDAGFADPDEKLKVDEEGSGWDVGDDDLELPKDLDIAPVSGG
EDFYVPPTKGNSQGQVWLSNSQLPMDHLAAGSFDSAARLLNEQLGVVNFEPYKQLFMLAY
ARGRVAVPGLPSCPSLYFYPHRNWKEAGAKAGLPAIGLKLNNLVQRLQVAYQLTTGGKFT
EAAERLHQILLSVTLLVVESRQEITEAQQLLGICREYLVGLQMETVRKDLPKDTSDQQKR
VCEMAAYFTHCSLQPIHLVLTLRTALNLAFKIKNYKTAASFARRLLELGPKPEVAQQTRK
ILQACEKSPTNAVVLDYDELNPFSICAVTYTPIYRGKPEEKCPLCQASYKPQYKGTICKI
CEVAEVGRPSSGLKISLSQFR
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgttgactaaatttgaaactaaatctgctcgagtaaaaggtcttgcatttcattctaaa
cgaccatgggttttagcaagtttacacaatggtgtgatacaactctgggattatcgaatg
tgtactttattagatcgatttgatgagcatgatggccctgtacgtggaattgactttcat
gaaaatcaaccattatttgtctcaggaggtgatgactacaaaattaaggtttggaattat
aagcagaagaaatgcatatttacattgcttggacatttagattatataagaacaacattc
tttcaccatgagtatccttggattgtaagttgctctgatgatcaaacaatacgtatatgg
aattggcaatcaagaaattgtattaatgttttaactggtcataatcattatgtgatgtgc
gctcaatttcacaaaactgaagattacattgtttctgcttctcttgatcaaacagtacga
gtatgggatatttccggtctgcgaaagaaatttgcttcacctggtacaaaagatcgtgat
gatacttcagtaaagaatcctgggcaaatagatttatttggacatgcagatgctgttgtg
aagcatgtgcttgaaggtcatgaccgcggtgtaaattgggttacgtttcaccctacaatg
ccattaattgtatctgcagctgatgaccgccaagttaaattgtggagaatgaatgaatca
aaggcttgggaagttgatacttgtcgtgggcattacaataatgtttcgtctgtaatattt
catcctagacaggagctaattttaagtaactcagaagataaatcaatacgtgtctgggat
atgtctaagagaactggagttcaaacatttcgcagagaaaatgacagatattggatactt
gctgctcatccaactcttaatttgtttgctgcaggacatgatagtggtatggttgttttt
aaactggagagagaaagaccagcttatactgtccatcaaaatactctttattatgttaag
gatcgttacttacgaatatatgaattcggatcttccattgataagccaataatgcagttt
aaaaaaggtgctggtcgaccaaaccctgttcacttagtatataatccagctgagcaatgc
attcttttgacctatggtacaagttcttcagttgacagtcaagtctatgagttacatgct
cttcctaaagatataaaatcttctgatcctgaagtgtctgaaggaaaaaaagctgctggt
atatcagctgtatgggtagctcgtaatcgttttgccgttctagataaacagcaaaatgtt
gtcattaagaatttaaaaaatgaagtgacaaaaaaagttacaactcctgcttgtgacatg
atattttatgctggtacaggaagtttactactaagggatgctgaacaaataatgttcttt
gatgtacagcaaaagagagttatggcatcaattaaaatagccaagtgcagatatgttgtt
tggtcatctgatatgaattttgttgcactaattgctaaacacacaatttcaatttgtaat
agaaaaatggaaaatttaagctcagttcatgaaagtgtgaaaatcaaaggtggtgcatgg
gatgattcaggtgtatttgtatacacaactagtaatcatattaaatacacattaacaaat
ggtgatagcggcataataagaacattggatttaccaatatacataactagagtgaagggc
agcagcgtttattgtttggatcgtgattgcaagactaaagttttgaatattgatcctaca
gagttcaagttcaaactagcattggtgaatcatcggtatgatgaagtactgaatatggtg
cggaatgcaaaattagtaggacagtccatcatctcttatttgcaaaagaaaggttatcca
gaggtggcacttcactttgttaaagatcaaaaaacaagatttggtttagcattagaatgt
ggtaatcttgaagttgcattagaagctgctaaatctcttgaagacaaactttgttgggaa
aagcttagtgaaatggcattgaaacaaggaaaccatcaggtagtagaaatgtgttatcaa
agaacaaaaaattttgatcgcctttcttttctatatcttacaactggtaatactgataag
ttaagaaaaatgctaaaaatctctgagattcgaaaagatgtaagtggtcacttacacaat
gctttgtactgtggagatattagagaaaggattaaagtgctgaagcaagttggtcaaggt
tcactagcttatctgactgctgcaactcatggactgactgaagaatgtgctgaaatacaa
actttgtttaatctggatccagagaagttgccagcaataaatcctaatgccaaactgttg
cggccacctgtaccaattttactgaatgaaggaaattggccactacttgctgttagcaag
acaatatttgaaggatcaacaccattaaaagatgcgcctatgtcagtttcagcagttcaa
ggtgattttggcgaggaaggagaaggatggggagattcagatttggtcttggaagaagat
gcaggatttgctgatcctgatgaaaaattaaaagttgatgaagaaggtagtggttgggat
gttggagatgacgatcttgaactcccgaaggatctggatattgctccagtatcaggtggt
gaagatttttatgtacctcctactaaaggcaatagccaagggcaagtatggttgtccaat
tctcaattaccaatggatcatttggcagctggttcatttgattcagcagcaaggctacta
aacgaacaattaggagttgtaaattttgaaccttacaaacagttatttatgcttgcatac
gctcgtggtcgtgtggcagtaccaggcctaccttcttgtccaagtttatacttttatcca
cacagaaactggaaggaagctggagcaaaagctgggttacctgctattggcttaaagtta
aataacttagtacaaagattacaggtagcataccaattaacaactgggggaaaatttact
gaagcagcagaaagacttcatcagattcttttgagtgttactttgttagttgtagaatca
aggcaagaaataactgaggcccaacagctattgggtatctgtagggaatatcttgttggt
cttcaaatggagactgttagaaaagatttaccaaaggacacatctgatcagcaaaagaga
gtttgtgagatggcagcttactttacacattgcagtttgcaacctattcatttggtgctt
acccttcgaactgcattaaatcttgcttttaagattaaaaactacaagactgctgcgtcc
tttgcacgtcgtttattagagttaggaccgaaaccagaagttgctcaacagacacgaaaa
attttacaagcttgtgaaaagagtcctactaacgcagtggtattggattacgacgaactt
aatccattttccatttgtgctgttacctatactccaatatataggggtaagcctgaggaa
aagtgtccattgtgtcaagcttcgtataaacctcagtataaaggaactatttgcaaaata
tgcgaggttgctgaagtcggaaggccaagctctggtttaaaaataagtctttcgcagttt
cgctaa
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