Hydra vulgaris (swiftwater hydra): 100202565
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Entry
100202565 CDS
T01080
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100202565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hmg03041
]
100202565
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100202565
Spliceosome [BR:
hmg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100202565
Complex C
U4/U6.U5 tri-SnRNP related factors
100202565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
AAA_30
Flavi_DEAD
nSTAND3
PhoH
TsaE
Cas3-like_C_2
mSLOG
Motif
Other DBs
NCBI-GeneID:
100202565
NCBI-ProteinID:
XP_002169791
UniProt:
A0A8B6XTR6
LinkDB
All DBs
Position
4:complement(25453564..25476451)
Genome browser
AA seq
1027 aa
AA seq
DB search
MSDDVYLERWVSEKLYETLDMSDKHVVTFLIGLAKKTASAERYIEKIQDVIGDEKNAFTS
VAKELWNKIPRVSKNESSNRIKEKLALEQQKKNATYTMLSESEEENISLPKKKTNKNKKN
VRKHRSESSSSENEPITSEAKKESESSDNEEDIRAKDIEERDRFAERLRKKDKEQTRKLI
EKSDKKAFEEAKKRLQLEEEDRKKIIPELRDQARKAYVKKRKVEKVDALREDIEDDEKMF
EESELTEREKLERQYKKKIYNLAKDYDNVSAEVKLQRYVIPSDKDGYTDTFVEEQQVAQT
FVSEQHRWEDSKIDHAVMKFGSKDAQKKYQEKEKQYDLLVEEDQIAFIMADRMPGTKLSE
EDIIVSEVKKKKESIMECRRSLPIFKFRESLLEAIEAHQVLIIEGETGSGKTTQIPQYLV
EAGYTKEGKKIGCTQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCCSEKTIVKYMT
DGMLLREFLGEPDLASYSVMIIDEAHERTLHTDILFGLIKDIARFRKDIKLLISSATLDA
EKFSMFFDDAPIFRIPGRRFPVDIFYTKAPEADYIDACVVTVLQIHLTQPDGDVLVFLSG
QEEIETCNEMLQERTRKLGNKIKELIILPIYANLPSDMQAKIFEPTPPGARKIVIATNIA
ETSLTINGIIYVIDPGFCKQKSYNPRTGMESLVVTPVSKASANQRAGRAGRVAAGKCFRL
YTAWAYKNELEENTIPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPPPAETLILALEQLY
ALGALNHMGELTKLGRKMAELPVDPMMAKMIIAAEKYKCVEQILTISAMLSVNASIFYRP
KDKIVHADNARKNFFRPGGDHLTLMNVYDQWAESGHSTQWCYENFIQFRSMRRARDVREQ
LEGLVDRIEIELTSAAHDSVGIRKAITSGYFYHTAKFGQGGNYRTVKHMQTVMIHPNSCL
FEEQPRWVLYHELVFTSKEFMRSIIEIESSWLLEVAPHYYKAKELEDSSAKKMPKTKGVS
KTEARAF
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgtttatctagagagatgggtttcagagaaattatatgaaacattggac
atgtctgataaacatgttgttacttttttaattgggttagctaaaaaaacagcttctgct
gagagatatattgaaaaaatacaagatgtcattggggatgagaaaaatgcattcacatca
gtagctaaagagctctggaataaaattcctagagttagtaagaatgagagttccaatcga
ataaaagaaaagttagcattagagcagcaaaagaaaaatgctacctacactatgctatca
gaaagcgaagaagaaaatatatcattgccaaaaaaaaaaactaataaaaataagaagaat
gtaagaaaacatcgttctgaatcaagctcttctgaaaacgaacctattacatcagaagca
aaaaaagaatcagaatcaagtgacaatgaagaagacatcagagctaaagatattgaagaa
agagatcgatttgctgagagacttcgtaaaaaagacaaagaacagaccagaaagcttatt
gaaaaatctgataaaaaagcatttgaagaggcaaaaaaaagattacagttagaagaggaa
gatcgaaaaaaaattattcctgagttgagagatcaagctaggaaagcatatgttaaaaaa
aggaaagtggaaaaagttgatgcactaagagaagatatagaagatgatgaaaaaatgttt
gaagaatcagagttaactgaaagggaaaagcttgagagacaatataagaaaaagatttat
aatcttgccaaagattatgacaatgtttcagctgaagtgaagttgcaaaggtatgtaata
cctagtgataaagatggatatacagatacatttgttgaagagcaacaagttgctcaaaca
tttgttagtgagcagcatcgttgggaagattcaaaaattgatcatgctgttatgaaattt
ggttcaaaagatgctcaaaagaaatatcaggagaaagaaaagcagtatgatttgcttgtg
gaagaggatcagatagccttcataatggctgatcgaatgccagggacaaaactaagtgaa
gaggacattattgttagtgaagtgaaaaaaaagaaagagagtattatggaatgtagaaga
agcttaccaatttttaaatttcgagaatctcttttggaagctattgaagcacatcaagtt
cttatcatagaaggagaaactggttctggtaaaactacccaaattcctcagtaccttgtt
gaagctgggtacactaaagaaggaaagaagataggttgtactcaaccaaggcgtgtggct
gccatgagtgttgcagcacgtgttgctgaagaaatgggagttaaacttggaaacgaggtt
ggttacagcattcgttttgaagattgctgttcagaaaaaacaattgtcaaatatatgact
gatggaatgttgctgagagagtttcttggggaacctgatttggctagttacagtgtgatg
ataattgatgaagctcatgagaggacattgcacacagatatattatttggacttattaaa
gatattgccagatttcggaaagatataaagctacttatatctagtgctactcttgatgct
gagaagttttcaatgttttttgatgatgctcccatatttcgtattcctgggcgtcgattt
cctgttgatatattttataccaaagctcctgaagctgattatatcgatgcttgtgttgtt
actgtgttacaaatacatttgactcagcctgatggtgatgtattagtttttttgagtggt
caagaagaaattgaaacatgcaatgaaatgctgcaagaaagaactcgtaagttaggaaac
aagattaaggaattaattattttgcctatctatgctaatttgccatcagatatgcaagca
aagatatttgaaccaactccacctggtgcaagaaaaattgttattgccacaaacattgct
gaaacatcacttacaatcaatggaattatttatgtaattgatcctggattttgtaagcaa
aaaagttataacccgcgcactggtatggaatcccttgttgtgactcctgtctcaaaggct
tctgctaaccaaagagctggtagagctgggcgagtagctgctggtaagtgttttcgtttg
tatacagcttgggcatataaaaatgaactcgaggaaaacaccataccagaaattcaaaga
acaaatttaggaaatgttgtcctgttacttaaaagcttaggaataaatgatttgattcat
tttgattttatggatcctcctccagcagaaacactaattcttgcattagagcagttgtat
gctttgggtgctttaaaccatatgggagagctaacaaaattaggtcgtaaaatggctgag
ttgcctgtagatccaatgatggctaaaatgattattgctgcagaaaaatacaagtgtgtt
gaacaaatattgacaatatctgctatgctctcagtcaacgctagcatattttacagacca
aaagataaaattgtacatgcagataatgcccgtaaaaatttttttcgtcctggaggggat
catttaacattgatgaatgtgtatgatcaatgggctgaatcaggtcacagtactcaatgg
tgttatgaaaattttattcagtttcgttcaatgagacgtgcacgtgatgtacgggagcaa
cttgaaggacttgttgatcgaatagaaattgagctaacatcagcagcgcatgactctgtt
ggtattagaaaagcaattacctctggttatttttaccacactgccaagtttggacaagga
ggaaactatagaactgtaaaacatatgcaaacagtaatgattcatcccaatagttgccta
tttgaagaacagcctcgttgggtactttatcatgagctagtttttacaagtaaagaattt
atgcggtcaatcattgaaattgaaagttcgtggctgcttgaagttgccccgcactactac
aaagctaaagaattagaagactcttctgctaaaaagatgcctaagactaaaggggtgtct
aaaactgaagcccgagcattttaa
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