Hydra vulgaris (swiftwater hydra): 100202958
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Entry
100202958 CDS
T01080
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03440
Homologous recombination
hmg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100202958
03460 Fanconi anemia pathway
100202958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmg03032
]
100202958
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100202958
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
100202958
DNA replication proteins [BR:
hmg03032
]
Eukaryotic type
DNA Topoisomerases
100202958
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
100202958
FA (Fanconi anemia) pathway
100202958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Toprim_4
Zn_ribbon_recom
Motif
Other DBs
NCBI-GeneID:
100202958
NCBI-ProteinID:
XP_047132274
LinkDB
All DBs
Position
5:14388488..14460346
Genome browser
AA seq
992 aa
AA seq
DB search
MLKVISFLMPRFGEDGMHVLNVAEKNDAAKCLSQIMSNGRSNRREGFSKFNKIYEFEYKI
FNCNCNMIMTSVSGHLIDLDFGGGYNKWNQCAPVALFEAPICRFVPDNFKDIQKTLEREV
RKCQALIIWTDGDREGENIGFEIIEVCQKAKSNIDVYRAKFSEITSRAVHQACRNLVAPD
KNVSNAVEVRRELDLRIGASFTRFQTMRLQKRFPTVLADQLISYGSCQFPTLGFVVERYK
QVQEFLSEEFYKIKVTHFKDECTANFVWKRGRLFHERVCSILCNMCQENPRATVTNMISK
PKSKWRPVALDTVELEKLASRKLKINAKETMKIAEKLYTQGIISYPRTETNIFPKGLNLT
PLVENQTVDPQWGGFASNILANNGPNPRQGKKTDNAHPPIHPIKYIDSLQGNEKRIYEFI
VRHFLACVSKDAVGHETVFEIEISGEYFTVHGLVITERNYLDVYPYEQWNTKNIPIYQLG
EVFFPDSIELVSGETCPPPLLTEADLITLMDKHGIGTDATHAEHIETIKSRNYVGVQHDG
TFLPGQLGMALVEGYDAMGFAMSKPHLRASLEADLVLICQGLKNEKEVLTQQIQSYKNVF
EQAVAQVQKLDDSLSKYFGEASDVTDDIFNEMSDPVRKCPKCGNNMTLRKTKEGSFFLGC
MGYPNCRNSLFFPKFLLNAVRSDTTCLHCKPHPVHKIEFHFKRGSMPPGFGEHYIGCIGG
CDEMLIGALAARDAIAPVNNPPPLRRADLGHGAFNNSGGIQMRDNQCQFNNNQQKTNYKQ
TSNQNQHGTKKQSFSTTNIQKNNKFSSTTTKHKQNNLVNKNHKGFNNNQGDDSNVVCNCN
QSAIKLVVKKEGPNQGRQFFKCGQSDRPCNFFLWSEEQGNKSGLQNVNKPISNTNNDTKC
GCELPAAQRTVQKDGPNKGRQFYCCPNSRGEQCSFFQWVDQALETNEPEQGGSSNISKRK
APGGLPQEQTKKRKCGVCAREGHTKRSCPFAK
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaggtaatatcttttttaatgccacgatttggtgaagatggaatgcatgtgtta
aatgttgcagaaaagaatgatgctgcaaaatgtttatcacaaatcatgtctaatggcaga
tcaaacagaagagaaggtttttcaaaattcaacaaaatatatgaatttgagtacaagatc
tttaactgtaactgtaacatgattatgacttcagtttctggacatctgattgatttagac
tttggtggaggttataacaaatggaaccaatgtgcccctgttgcgctgtttgaggctcca
atttgcagatttgttccagacaattttaaagatattcagaaaacattagagcgtgaagtg
cgcaaatgtcaagcacttataatctggactgatggggatcgtgaaggtgaaaatataggt
tttgagatcattgaagtgtgtcaaaaagcaaaatctaatattgatgtctacagagcaaaa
ttttcagaaataacttcaagggctgttcatcaagcttgtagaaatcttgttgcacctgac
aaaaatgtttctaatgcggtagaagtaagaagagagttagatttaagaataggagcatct
ttcactaggttccaaacaatgcggttgcaaaaaagatttccaactgttttggcagatcaa
ctaattagctatggttcatgtcaatttccaacacttggctttgttgtagaaagatataaa
caagtccaagaatttctttcagaagaattttataaaattaaagttactcatttcaaagat
gaatgtacagctaattttgtatggaaaaggggtcgtctttttcatgaacgagtgtgctca
attttatgtaatatgtgccaagagaatcctcgagctacagtcacaaacatgatttctaaa
ccaaaaagtaaatggcgaccagttgctttagacactgttgaattggaaaaattagcatca
cgaaagctaaaaatcaatgcgaaagaaacaatgaaaattgctgaaaagttatatacccaa
ggaataatcagttacccccgtacagaaacaaacatctttccaaaaggtctaaatttaaca
cccttggttgaaaatcaaactgttgatcctcagtggggaggttttgcttctaatattctt
gctaataatggaccaaatccaagacaaggaaaaaaaacagacaatgctcatcccccaatc
catcctataaagtacatagactcattgcaaggcaatgagaaacgtatttatgaatttata
gttcgtcatttccttgcttgtgtctctaaggatgctgttggtcatgaaacggtgtttgaa
attgaaatatctggagaatattttactgttcatggtcttgtgattactgaaagaaattat
ttagatgtctatccatatgaacaatggaacaccaaaaacattccaatctatcaactagga
gaagttttttttccagacagcattgagttagtatcaggcgaaacctgtcctcctccattg
cttactgaagcagatctgattacattaatggacaaacatggaattggtactgatgctaca
catgctgaacatattgaaacaattaaatctcgaaactatgttggtgtccaacatgatgga
acttttttgcctggtcaacttggaatggctttagtagaaggttatgatgccatgggattt
gcaatgtctaaacctcatttaagagcaagtcttgaagcagatttagtgctaatatgccaa
ggtttaaaaaatgagaaagaagtgctgactcagcaaatacaaagttacaaaaacgttttt
gaacaggctgttgctcaagtgcaaaaacttgatgattcattatcaaaatactttggagag
gcatctgatgttactgatgatatatttaatgaaatgtctgatcctgttcgcaaatgtcct
aaatgtggaaataacatgaccttgcgtaaaactaaagaaggaagcttttttttgggttgc
atgggttacccaaattgtcgaaacagtttgttttttccaaagtttttgttgaacgctgtg
agatctgatacaacctgcttgcattgcaagccacatcctgttcataaaattgagtttcac
tttaaacgtggaagcatgccgccaggttttggagaacattatattggttgtattggtgga
tgcgatgaaatgttaattggtgctcttgcagccagagatgctatcgcacctgttaataac
cctccacctttaagaagagctgatcttggccatggcgcatttaataattcaggtggaatc
cagatgcgtgataatcaatgtcaatttaataataatcaacaaaaaactaactacaaacaa
acttccaatcagaatcaacatggaacaaaaaagcaatctttttctacaacaaatatacaa
aaaaacaataaattttcaagtactacaacaaagcataaacaaaataatctggtaaataaa
aatcacaaaggtttcaataacaatcaaggagatgatagtaatgtggtttgcaactgtaat
caatcggccattaagcttgttgtaaaaaaagaaggacctaatcaaggtcggcagtttttc
aaatgtggacaaagtgataggccatgtaacttttttttatggtcagaagaacaaggaaat
aaaagtggtttgcaaaatgtaaacaaacctatatccaatacaaacaatgatacaaaatgt
ggttgtgaactacctgctgcacaacgaactgttcaaaaagatggtccaaataaaggacgt
caattttattgctgcccaaattcaagaggagaacagtgcagtttttttcaatgggtagat
caagcacttgagacaaatgaaccagaacaaggtggctccagtaacataagtaaaagaaaa
gcacctggtggtctacctcaagaacaaacaaaaaaaagaaagtgtggagtttgtgctcgt
gaaggccatacaaaaagatcgtgtccatttgccaaatga
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