| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts 1
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| KO |
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| Organism |
hmg Hydra vulgaris (swiftwater hydra)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:hmg00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100203524
03015 mRNA surveillance pathway
100203524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:hmg03019]
100203524
Enzymes [BR:hmg01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100203524
5.6.2.5 RNA 5'-3' helicase
100203524
Messenger RNA biogenesis [BR:hmg03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100203524
mRNA cycle factors
Common to processing body (P body) and stress granule
100203524
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
9:complement(49628388..49649982)
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| AA seq |
1152 aa
MSTLESQSYGPSSQTLTFLETEEADFGADTQGSEFEFNEFTLPSQTQTQSQASQLNSQLE
QINHPILNGYPENSTTISVKKGGQEHELLVRKHGNKEKLSNNKEKEDSLVKDLAKSVSDL
NFEEEDEENIAEKVLPSHACRYCSIHDPASVILCNLCKKWFCNGRGNTSGSHIINHLVRG
KHKEVTLHKDGPLGETQLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCAQQSNKQDST
WDQTQWQPLIHDRCFLSWLVKIPSEQEQLRARQISATQINKLEELWKDNPDAVLEDLEKP
GVDEEPQAVLLRYEDAYQYQNIFGPLVNHEAEYDKKLKESQSQDNIVVRWDIGLNKKRIA
YFNFPRADGEMRLMQGDELRLRYNGEMRKPWSGEGHVTKVPNNFGEEVGLELRKNDGVPT
ECTHHFSVDFIWKSTSFDRMQYAMKTFAVDETSVSGYIYHKLLGHDVEEQNVKCSLPKRF
SAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSASIVYHLAKQGLGQILVCAPS
NIAVDQLTEKIHKTGLKVVRLAAKSREAIDSPVGFLALHNQVRNMDSMPELQKLQQLKDD
QGELSSSDEKRYKTLKTSAEKELLQHADVICTTCIGAGDPRLRVAKLRFRCVLIDESTQA
TEPECMVPIVHGTKQLVLVGDHCQLGPVVMCKKAASAGLSQSLFERLVVLGIRPIRLQVQ
YRMHPSLSEFPSNLFYDGTLQNGVTVAERSQPGVDFPWPVGDKPMFFYATTGQEEISSSG
TSYLNRTEAATVEKIATRFLRAGVKPEQMGIITPYEGQRAYIVAYMQFSGSLHSSLYQNI
EVASVDAFQGREKDYIIMSCARSNEHQGIGFLKDPRRLNVALTRSKYGLIIIGNPKVLSK
QPLWNHLLNDYKEKRVLVEGPLNNLKESMIQFSKPRKLVNRTNPGGRFMTNTMFDAREAL
LAPGMYPNRNIRPPHVDPVMDSYYRTHDRMNFFPTGPDQARNAFAANMPIPVGMFMSPMP
PPTYQFNHQAMSVRPGHQNRPRMPVGPRMNQKTGGNYNNNNNRNGTNQDLSQGPLSQGPL
TQGGMSQQMHPLSQPLSQPELSQDSYLGEDFQLKSQADQVLSQDSSYQGDRGGYHPFSSQ
ADYSQPMYNSQY |
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| NT seq |
3459 nt +upstreamnt +downstreamnt
atgtctacactagaatcccaaagctacggtccgtcgtctcagaccttgacttttttagaa
actgaagaagctgacttcggtgcagatacacaaggaagtgaatttgagtttaatgaattt
actttgccatctcaaacccaaactcaatctcaggcttcccaactaaactctcagttagaa
caaataaatcatcccatactaaatggttaccctgaaaattcaacaactataagtgtaaag
aaaggtggacaagaacacgaattgttagtcagaaaacacggcaataaagaaaaattatca
aataataaagaaaaagaagactcgttagtgaaggatcttgccaaaagtgttagtgacctt
aattttgaagaagaagacgaagaaaatattgctgaaaaagtattaccttcacatgcatgc
aggtattgtagtatccatgatccagcttctgtaattttgtgcaatctatgcaaaaaatgg
ttttgtaatggaagaggaaatacttctgggagccacattattaatcatttggttcgaggt
aaacacaaagaagtgacattacacaaagacggtcctttaggtgaaactcagctggaatgc
tataactgtggttgtcgcaatgtttttttacttggatttattccagcaaaagcagattct
gttgtagtcttactatgtcgtcagccttgtgcccaacaaagcaataaacaagattcaact
tgggatcaaacccaatggcagccattgattcatgatcgatgttttctttcatggctggtt
aaaattccttcagagcaagagcagcttcgggctagacaaatttcagcaactcaaattaat
aaactagaagaattatggaaggacaacccagatgcagtacttgaagatctagagaagcca
ggtgttgatgaagagccacaagcagtcctgttaagatatgaagatgcttaccagtatcaa
aatatatttggtcctcttgttaatcatgaagcagagtatgacaaaaagttgaaggaatca
cagtctcaagataatattgttgttcgttgggacatcggtttaaacaaaaaaagaatagca
tactttaattttccccgtgctgatggtgaaatgcgcttaatgcaaggggatgagcttcgc
ttacgctacaatggagagatgaggaagccttggtctggtgaagggcatgtaactaaagtt
cctaacaattttggagaggaagttggccttgaattacgaaaaaatgatggcgttcctaca
gaatgcactcatcatttctctgtagattttatttggaagtcaacatcatttgacagaatg
caatatgcaatgaaaacttttgctgttgatgaaacatctgtaagtggttacatttatcat
aagttattaggccatgatgttgaagagcaaaatgtcaagtgcagtcttcctaaaaggttt
tcagctcctgggctacctgagttaaatcattctcaagtgtatgctgttaaaactgttctt
caacgacctttaagtctcattcaaggtccaccaggtactggcaaaacagtgacttcagca
agtattgtgtatcaccttgctaaacaggggttgggacagattcttgtttgcgctccgagt
aatattgctgttgatcaactaacagaaaaaattcataaaacaggattaaaggtagttcgc
ttagctgccaaaagtcgagaagcaattgattcacctgtaggatttcttgcacttcataat
caagtaagaaatatggatagtatgcccgaacttcaaaaattgcaacagttaaaagatgat
caaggtgagctttcatcttctgatgaaaagagatacaaaacacttaaaacatcagctgaa
aaggagttacttcagcatgctgatgtgatttgtacaacatgtattggagctggtgatcca
agacttcgtgtagcaaaattgcgtttcagatgtgttctcattgatgaatccacacaagcc
actgaaccagaatgtatggtccccattgtacatggaacaaaacagcttgtcttagttggt
gatcattgtcaacttggtcctgtagttatgtgtaagaaagctgcaagtgctggtttatct
caatcactatttgaacggcttgttgtacttggtatacgacctattcgtttgcaagtgcaa
tatcgtatgcatccttcattaagcgaatttccatcaaatttattttatgatggaacactt
caaaatggtgttactgttgctgaaagatcacagcctggtgttgattttccatggccagtt
ggtgataaaccaatgtttttttatgctaccactggacaagaagaaatatcttcttctggc
acatcttatttgaacagaactgaagctgctacagttgaaaaaattgctacaaggttttta
cgtgcaggtgttaaaccagagcaaatgggcattataactccatatgagggtcaaagagca
tatattgtagcttatatgcagtttagtggttctctgcactcatctctatatcagaacatc
gaagtagctagcgttgatgcttttcaaggcagagagaaagattacatcataatgtcttgt
gctcggtcaaatgagcaccaaggtattggttttttaaaagatcctcgaaggctcaatgtt
gctttaactcgatcaaaatatggtttaattatcatcggaaatccaaaagtgctttccaaa
cagccgttatggaatcatcttctcaacgattacaaagaaaaacgagtactagtagaaggt
cctttaaacaatttgaaagagagtatgattcagtttagcaagcctagaaaattggtcaat
cgaacaaatccaggtgggcgttttatgacaaatacaatgtttgatgctagagaagcgctt
cttgcaccaggaatgtatccaaatagaaacataagaccaccacatgttgaccctgtgatg
gattcatactatcgcactcatgatagaatgaacttttttcctactggtcctgatcaagct
agaaatgcatttgctgctaatatgccaataccagttggaatgttcatgtcaccaatgcca
cccccaacttaccagtttaatcaccaggcaatgtcggtgcgtccaggtcatcaaaatcgt
ccacgaatgccagttggtccaagaatgaaccagaaaactggtggaaattataataataat
aacaatagaaatggaactaaccaggatttatctcaagggccattatcgcaaggtcctctc
acccaaggaggtatgagccaacaaatgcatcctttgtcacaaccactctctcaaccagag
ttatcacaggatagctacttaggagaagacttccagcttaaatctcaagctgatcaggtt
ttatctcaagattcgtcttatcaaggagatcgtggtggctaccatccgttttcttcacaa
gcagattactctcagccaatgtacaattctcagtattga |
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