Hydra vulgaris (swiftwater hydra): 100203542
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Entry
100203542 CDS
T01080
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03420
Nucleotide excision repair
hmg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100203542
09124 Replication and repair
03420 Nucleotide excision repair
100203542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hmg04121
]
100203542
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100203542
Ubiquitin system [BR:
hmg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
100203542
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
100203542
TCR (transcription coupled repair) factors
Cul4-CSA complex
100203542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
100203542
NCBI-ProteinID:
XP_047135064
UniProt:
A0A8B7DVJ1
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Position
6:42863898..42906578
Genome browser
AA seq
1142 aa
AA seq
DB search
MAYNYVVTAQEATAINATVTGHFTGPTDLNLIVAKNNKLELHMVTPEGLQPKFDLNVYGR
VAVMQLFRPQNENQDLLFILTERYRTAILAYKAETGDIITKAYGDVQDKIGRPSDTGMIG
IIDPQCRMIALHIYDGLLKVIPLDLGSNMELKAFNIRLEELHVVDIQFLYGSFTHPTIIL
VYQDTHGRHVKTYGISLADKEFKRGPWKQDNVELEACMLITVPKPIEGALIVGHESITYH
KGETYLAVAPPAMKQSSLSCYGRVDKEGLRYLLGDTSGRIFMLFLDYQTKASEVKDLKLE
LLGETSIPHCLTYLDNGVVFIGSCLGDSQIVKLNTEPDKKGSFITILRSFTNLGPILDMC
VVDLERQGQDQLVTCSGAFKDGSLRIIRNGIGINELASIDLAGIMGLWCLKVNSINSDLH
DTMVLSFVGQSRVLSLSTEEVEEIEIEGFSSDKQTTYCANVNFNQLIQVTEESILLISCS
THKLLFNWLPPDNKHISVAVSNSFQIVVSLGKELIYLEVEDSNIKQISHTVLEYEVACLD
LSPKANETTSDRLCVGLWTDISVRILALPNLEELYVEKLSGEMIPRSILMITFEDKEYLL
CALGDGSLFYFLLNRLTGVLSDQKKVSLGTKPTVIQSFKSGSSTHVFACSDRPTVIYSSN
NKLVFSNVNLKEVCYMSPLNTQAYPNSLAIADKNCLTIGSIDEIQQKLHIRSVPLYESPR
RIVYQESTQTFGVISSRTEVRDLYSGKNIAQRPSASITASCITYSSGDSSQGNLTGSQKD
FEEGAIGMEVEVSSFLVFDQHTFEVTHSHQFLENEWATSLTSCSFSNDPNTYYCVGTSMV
YPEESEPKEGKIILFQLFEGKLVQIGSKTVNGAVYVLQGFNGKLLAGVNSLVSVYEWTSD
KELKQECCYHNTILALYLKSKGDFILVGDLMRSMTLLAYKPLGRLEEIAHDFSPNWMTAV
EIIDDDTFLGAENSFNLFICQKDNSSVNDEERHHLQTIGKYHLGDFVNVFKHGSLVMHHS
TEQLTPISSSILYGTVRGAIGLVAGLPKNTFDFLSQVQEKLSKTIKSVGKIEHEFWRSFY
NDKKTDLAVGCVDGDLIESCLDLTRTQLHEVVSGLEIEEAGIKRECTVDDLIKVVEELSR
IH
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggcatataactatgttgttacagcacaagaggcaactgcgatcaatgctacagtaact
ggtcactttacaggaccaacagacttaaatttgatagttgctaaaaataataaattagag
ttacatatggtaactcctgagggtctgcaacctaaatttgatttaaatgtgtatgggaga
gtagcagttatgcaattatttagacctcaaaatgaaaaccaagatttgctttttatatta
actgagcggtatcgaactgctatattagcttataaagcagaaactggtgatattataaca
aaagcttatggtgatgtgcaggataaaatcggccggccaagtgacaccggaatgataggt
ataattgacccacagtgtcgaatgatagctttacatatatatgatggattgttaaaagtt
attcctttggatcttggttcaaacatggaattaaaagcattcaatattagattggaagaa
cttcatgttgttgatattcaatttttatatggttcgtttacacatcctactataatttta
gtgtatcaggatacacacggaaggcatgttaaaacctatggtatttcactggctgataaa
gagtttaaacggggaccatggaagcaagacaatgttgagctagaggcttgtatgctaatc
acagtacctaaacccattgaaggagccttaattgttggacatgagtccattacatatcat
aaaggagagacttatctagcggtggcacctcccgctatgaaacaaagctcattaagttgt
tatggccgagttgataaagaaggtttaagatacttacttggtgatacatctggtcgcatt
ttcatgctatttttggattatcaaacaaaagcttcagaagtgaaagatcttaaattagag
cttcttggggagacatcaattccacattgtttaacttatcttgataatggtgttgttttc
attggttcatgtcttggagactcacaaatagtcaagttaaacacagagccagataaaaaa
ggctcatttattactatactgcgttcatttacaaaccttggacctattcttgatatgtgt
gttgtagatcttgaaagacaggggcaagatcaacttgtgacttgctcaggtgcatttaaa
gatggcagtcttagaattataagaaatggcattgggattaatgagctagcttcaattgac
cttgctggaataatggggttatggtgcctaaaggtaaactcaattaattcagatcttcat
gatacaatggttctgtcatttgttgggcaatcaagagttctttcattgagtacggaggaa
gttgaagaaatagaaatagagggatttagtagtgacaaacaaacgacatattgtgcaaat
gtaaactttaatcagttgattcaggttacagaggaatcaatattgcttataagttgttca
actcataaacttttatttaactggttgccacctgacaataagcatattagtgtagctgtt
agcaacagttttcaaatagttgtgagtcttggcaaagaattaatttatctagaagttgaa
gactccaatattaaacaaataagtcatacagtgttagaatatgaagtagcttgcttggat
ttatctcctaaagcaaatgaaaccacatccgacaggctatgtgttggtctgtggacagat
atctctgtgcgaatacttgcgttgcctaacctagaagaactatatgtagaaaaacttagt
ggagaaatgattcctcgatccatccttatgattacatttgaagataaagaatacttacta
tgtgcacttggagacggatcattgttttattttttgttaaaccgtttgactggtgttctt
tctgaccaaaagaaggtgtcccttggcacaaaaccaactgttattcaatcatttaaatcc
ggatcctccacacatgtatttgcttgctctgaccgaccaactgtaatttactctagtaat
aataagcttgtattttccaatgtaaatttaaaggaagtgtgttatatgagtccactcaac
actcaagcttatcccaatagtttagcaattgctgataagaactgtcttaccattggctca
attgacgagattcaacaaaagttacatataagatctgtaccactctatgagtcacctagg
cgaatagtttatcaagaatcaacacaaacatttggtgtaatctcttcacgtacagaagtt
cgggatctttatagtggtaaaaacatagcccaacgtccttcagctagtattactgcgtct
tgtataacatatagttctggtgacagtagtcaaggtaatcttacaggatctcaaaaagac
tttgaagaaggtgcaattggcatggaagttgaagtttcttcatttttagtatttgatcaa
catacctttgaagttacacattcacatcagtttcttgaaaatgaatgggcaacttcattg
acttcttgctcattttctaatgatccaaatacttattattgtgttggcacttcaatggtt
tatccggaggagtctgaaccaaaagaaggcaaaattatcttatttcagctttttgaagga
aaacttgtacaaattggcagcaaaacagttaatggtgcagtgtatgttctacagggcttt
aatggaaagttattggctggagtcaacagcttggtatctgtgtatgaatggacatcagac
aaagaattaaaacaagagtgctgctaccacaatacaattcttgctttatatttgaaatca
aaaggagattttatccttgttggtgatttaatgcgctctatgacacttctagcatacaaa
ccacttggtagacttgaagaaattgctcatgatttttcaccaaactggatgacagcagta
gagattattgatgatgacacttttcttggtgctgaaaattcttttaacttatttatttgt
caaaaagataactcttcggttaatgacgaagaaagacatcatttgcaaacaattggcaaa
taccatctaggagattttgtcaatgtatttaaacatggttctttggtaatgcatcacagc
actgaacagttgacacctattagtagttctatattgtatggaacagtacgaggggctata
gggttagttgctggtttacctaaaaacacatttgatttcctatctcaagttcaagaaaaa
ctttcaaaaaccattaaaagtgttggtaaaattgaacatgaattttggcgatctttttac
aatgacaaaaaaactgatttagctgttgggtgtgttgatggagatcttattgaaagttgt
ttggacctaacaaggacacaactgcacgaagttgttagtggtttagagattgaagaagca
ggcattaaacgtgagtgtactgttgatgatcttataaaagtagtggaggagcttagtcga
atccattaa
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