Hydra vulgaris (swiftwater hydra): 100203950
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Entry
100203950 CDS
T01080
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1 homolog
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hmg04040
]
100203950
Ion channels [BR:
hmg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100203950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ank_KRIT1
Ion_trans
ANK_LRRK2
HTH_upst_double_PIN
Motif
Other DBs
NCBI-GeneID:
100203950
NCBI-ProteinID:
XP_012558786
UniProt:
A0A8B7DLV8
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All DBs
Position
3:complement(34475131..34552392)
Genome browser
AA seq
1356 aa
AA seq
DB search
MTNKEKNGNDHHFVTKFHQDEILSVLVPLDPNSKQKKADALNKASLLTLHQAARDGQVKT
VENYLSQYGKDRRKVNKKDEEETTALHYAVRYGHFNIVKLLVENGASVNIQGEYGATPLH
YAARYMKKTDIEQMNIENKEPSATIQKYHSLNQMEKFGLLHGSKKNLSKVPKFDINKKSL
KKKIHGSFDEFNLLYVNNFIDSNIKTLYSEPSVVFHSKRHNSFHYGYENTNKKEGNSAVV
ILGDLSQDEIANMKSVDALILPPVKNVSFSEVELDQNSRRISTVVSTANISSDFNFPVNN
CSEHISPSNNSFDQVSFENVSSADINAKEKLVKKKPYLFKRKRNNNKAHQNSILMYLIEQ
KANINSKDFNGSTPLHYAAMRGNAVAVEMLLMQKNINIEATDQSKMTPLHCASSAGSFDV
CHLLLEHGAKIICQDKENMTPLHFAAMEGHLDVVQLLFDYAESRGGITLIAKLIFSADQD
EQSALHLAVENNHIDIVKFCINKGSNVNLVKANMNSPLHLACTSGFLEIAKLLVENGAVI
ESKNSLQETPLHRAALFNRTEIIEFLLDKGADVNCRDKDNETPLLMAVRKNNVEAVKVLL
RYSADPNVKDANDKTCLFIAAEHNSREALNALCKNDICNLLEEFDKHEMRPLHIAAKEGH
ENIVQTLLSLGARIDAKSDESLTPLHLAAKYGHSRIVQLLLSNVLSIVNDVDDSSNTPLH
LAAMEGHVKVVEMLIEAGSAVDTRNAKLMTPLDCAAYRGWNQCAQCLLDADSAVNPTDKV
KVTSLHLASKEGHVGIVNLLLSRNADVTRRDHLGKNCLDYAIENNQREVVVAIIGCNNWK
NALRNSTVEGNKLTTPMRKLIQKLPDVAEQVFNQCILDNGLPPEHPQFKITCSYEFLEDT
FTPWGTIDSDSSENQDNKQLMYSSHQFFLSKISRQIFPMYWMKKKDLKQNHPLKFMVQNE
RTRLLSHPLVTYLLRRKWSSCGRYVYYSRLLLYMIFLLFITAFALSLKVNYDQLVLRNST
SPILVDLSANSSVKFFIDPSVSPSVKFFIYPGRYFVLVLCLISLGIELVKLLTDPYHYIR
IHRVVELAAYICSSIYAFGFFGSIQYVDEQRQLGAASVTLSWLGLVLLLRKFPKLGIYVV
MFTHVLKTFTQISPVLFLFIIAFGLGFHLVMFIDKPISYTTPARSLAKVIIGMMGEYEYD
TIFNSEGGPYFPSPVTWAMMIMFIIINCILLMNLLIGLAVDNIKGVQKQAVLNRLAMLVD
LTLDVEKALPIAVQKRLVKMEESIFPNVHKSWSFWSFWSFESPATNIKKKNTIKNIKKEH
KETLLSLRRRMKAIEAQNNRVEDVLNGIINHLNVKQ
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacaaagaaaagaatggaaatgatcatcattttgtaacaaaattccaccaagat
gaaatccttagtgttttagtaccacttgatccaaattcaaagcaaaaaaaagcagatgct
ttaaacaaagcctctctgttaacattacatcaagcagccagagatggtcaggtaaaaact
gttgaaaattatttgagtcaatatggtaaagacagaagaaaagttaacaaaaaagatgaa
gaggagactacagctcttcattatgcagttcgatatggtcattttaatattgtgaaatta
cttgttgaaaatggagcaagtgttaacatacaaggtgaatatggcgctactccattacac
tatgcagctcgatatatgaagaaaacagacatagaacaaatgaatattgaaaataaggag
ccatctgcaacaatccaaaagtatcattcactaaaccaaatggaaaaatttgggttgtta
catggcagcaaaaaaaatctttcaaaagtaccaaaatttgatatcaacaaaaaatcttta
aaaaaaaaaattcatggttcttttgacgaatttaatttactatatgtaaataacttcatc
gactctaatataaagactttatactctgaaccaagtgttgtttttcattcaaaacgacat
aacagttttcattatggatatgaaaatacaaataaaaaagaaggcaatagtgcagttgtc
attttaggtgatttaagtcaagatgaaatagcaaatatgaaaagtgttgatgcacttatt
ttgccacctgtaaaaaatgtttctttctcagaagttgaactcgatcaaaattctagaagg
atttctactgttgtttctactgccaatatttcttctgatttcaatttccctgtgaataat
tgttctgagcatatttcccctagtaataattcttttgatcaagtttcttttgaaaacgtt
tcttctgctgacatcaatgcaaaagaaaaactagttaaaaaaaagccatatctttttaag
agaaaaagaaacaacaataaagcgcaccaaaattcaatattgatgtatcttatagaacaa
aaagcaaatattaattctaaagactttaatggttctactcctctccactatgctgccatg
agaggaaatgctgttgctgtagagatgctgcttatgcaaaaaaacataaatattgaggca
actgaccaatcaaaaatgacccctttacattgtgcatcaagtgctggttcctttgatgtt
tgccatctgcttttagaacatggtgcaaaaatcatatgtcaagataaagagaatatgact
cctttgcattttgcagctatggagggtcatttagatgttgttcaactcctttttgattat
gctgagagtcgaggtggtataaccttgatcgccaaattgatattttcagctgatcaagat
gaacaaagtgctcttcatcttgcagttgaaaacaatcatattgatattgtgaagttttgt
ataaataaaggctcaaatgttaatttggtgaaagcaaatatgaattctcctttacatctt
gcttgcacatcaggatttctagagatagcaaaacttttagttgaaaatggtgctgttatc
gaatctaagaattctttacaagaaactccattgcatagagctgctctatttaaccgaact
gaaataattgagttcttgttggataaaggggcagatgtaaactgtcgtgataaagacaat
gaaacacctttacttatggctgtacgtaaaaataatgtagaggcagtcaaagtgttgctt
agatattctgcagacccaaatgtaaaagatgcaaatgataagacttgtttgtttattgct
gctgaacacaactcacgagaagcattaaatgctttatgcaaaaacgatatttgtaatctg
ttagaagagtttgataaacatgaaatgaggcctctccatattgctgcaaaagaaggacat
gaaaatattgtccaaactcttttgagcttaggtgcacgcattgatgctaagagtgatgaa
agtcttactccactacacctagctgcaaagtatggtcactcaagaatagtccaattgtta
ttatcaaatgttttgagcattgtcaatgatgttgatgattcttcaaatacacctcttcac
cttgctgcaatggaaggtcatgttaaagttgttgagatgcttattgaagctggttctgca
gttgatactagaaatgcaaagctaatgacacccttagactgtgctgcttaccgtgggtgg
aaccagtgtgcccagtgtttgttagatgctgactcagctgtaaatcccactgataaggtc
aaggtaacttctttacacctggctagcaaagaaggacatgttggtattgtaaatttgtta
ctttcaagaaatgcagatgtcactcgaagagatcatttgggaaaaaattgtttagattat
gctattgaaaataatcaaagagaagttgtcgtggctattattggatgtaataactggaaa
aatgctctgcgtaactctactgttgaaggaaataaactaacaactccaatgagaaaactt
attcaaaaacttcctgatgttgctgaacaggtgtttaaccaatgtatattggataatggt
ttgcctcctgaacatcctcaatttaaaattacatgctcttatgagtttcttgaagataca
tttactccatggggaactattgattcagatagcagtgaaaatcaagataataagcaactt
atgtattcttcccatcagttctttttgtcaaagatttctagacaaatattcccaatgtat
tggatgaaaaaaaaggatttgaaacaaaaccacccattaaaatttatggttcaaaatgag
cgtactagactcttgagtcatcctttagtaacttatttattaaggcgaaaatggagttct
tgtggccgatatgtttattactccagactgttattgtacatgatttttcttttgttcatt
actgcatttgcattatctttaaaagtaaattatgatcagcttgtattaaggaattcaaca
agtccaattttagttgatttatctgctaattcctcagtgaagttttttattgatccatct
gtcagtccatcagtgaagttctttatttatcctgggagatattttgttttagtattatgt
ttgataagcttaggaattgagttagtcaagcttcttacagatccttaccattacattcgt
atacacagggttgtggagttagcagcttatatttgctcatcgatttacgcttttggattt
tttggaagcattcaatatgtagatgaacagcgtcagcttggagcagctagtgtcacttta
tcatggctgggtttggttttacttttgagaaaatttcctaaacttggaatatatgttgtt
atgtttacacatgttttgaagacatttactcaaatttctcctgttttgtttttatttata
attgcttttggtttgggattccatttggtcatgtttattgataaacctatttcatacact
acacctgcaagatcattggctaaagtgataattgggatgatgggagagtatgagtatgat
acaatatttaatagtgaaggtggtccatattttccatcacctgttacatgggcaatgatg
ataatgtttatcataattaattgcattctgttgatgaatttgttgattggattagctgtt
gacaatattaaaggagtacaaaaacaagctgttcttaacagattagcaatgttggtggac
ttaacactagatgttgaaaaagcattacccattgcagttcaaaagcgactagtcaaaatg
gaagaatcaatttttcctaatgtacataagtcatggagtttttggtctttttggtcattt
gaatctccagctactaacataaaaaaaaagaatactattaaaaatatcaaaaaggaacac
aaagaaactcttcttagtttgcgtagaaggatgaaggctatcgaggcacaaaataacaga
gtggaggatgtattgaatggcattatcaatcatcttaacgttaaacaatga
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