Hydra vulgaris (swiftwater hydra): 100204113
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Entry
100204113 CDS
T01080
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100204113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hmg04131
]
100204113
Membrane trafficking [BR:
hmg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100204113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
TPR_Vps41
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
100204113
NCBI-ProteinID:
XP_002170800
UniProt:
T2M918
LinkDB
All DBs
Position
5:28709699..28712903
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AA seq
850 aa
AA seq
DB search
MSFKAFEVTNVIEQSNFGDKVKGTISCLDVSTNNLYIGTSDCFLSHFAFEKGISPSNKAT
FISKLQRHKHLGFQKPIKQLIACFPACQLLVLCESKVYAVSMIGLEFRNNSNKEIFKGIT
VMAKNKNPQSFNPDETQLCLGTKKKTIQVVTFSKDKIFVLKEVNLPGIPLTLSIDAQTVC
TVLDNQYYLVNYIKYAIQELFIFEKGHVLPLVKCIGFQEFLLNGPTDTMGMIVTADGLSL
HQPLTWSESILSVACSYPYILVLGNSTVTIHNLIDQKQKQTMLFTGGVFINDYNGDVYIA
TQKSVMAFIAVPLSKQIQLLVDNKRVEEAFDLLQVARKLKQCPPNFDKQIQIQAAFIYFL
ENNFEKAYKLFVESFMDPRELIVLYPDIMPRNSTYIPSKPSYHSIPDIMFVVKNSQTALK
ESKLLLLKYLEVIRKHHSDLSFEIDTALAKIYIEFDHPSLFEFLSKENNAFVEETLSWLQ
KYNQFQCMAFYFVYLKQPQKAMDIWNKLQSNKLHDDKYTGMSCIIDYLLSVDNTELIWNN
IKWLLDNNETLAVKVFINRDIFSHVQVFNFLHKFPIALQVYLEYLVIDKKIDEEVFHTHL
AGMYIDHVLKLLNENNQINEINHERKRLQSLLETSSKYKISTLLNKISEYPLYHESAILY
GKLGQHDKAMKILVYKLKDFVAAERYCDIISVNKDNIFKQHLFHMLLNVYLNPVENEDGV
RAEHLVEPTIQLLNKRRAEFNSVSVLKILPEDWSVGLIQPFLSGTLREMLWKERKSKIES
RLCSLHYLKTKFSNISLQSGYFKMTEDSCCDFCLRPYTEPILVCYPNKKGFHPHCCKDKY
ICPATKINFK
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaaggcatttgaggtaacaaacgttatcgaacaaagtaattttggcgataaa
gtaaaaggtacaatatcttgtctagatgtttctacaaataacctttacatcggaacttct
gactgctttttatcgcattttgcctttgaaaaaggaatttctccatcaaataaagcaaca
tttattagtaagttgcaaaggcacaaacaccttggttttcaaaaaccaattaagcagtta
atagcatgctttcctgcatgtcaattacttgtgctttgtgaaagtaaagtttatgctgtc
tctatgattggtttagaattcagaaataattcaaataaggagatttttaagggaataaca
gttatggcaaaaaacaaaaatccacaaagttttaatcctgatgaaacacaattatgttta
ggaaccaaaaagaaaacgattcaagttgtcactttttcaaaagataaaatatttgtttta
aaagaagttaatcttccaggtatacctttaacactgtctatagatgctcaaactgtttgt
actgtgcttgacaaccaatattatttagttaattacataaaatatgctatccaagagttg
tttatttttgaaaaaggacatgttttaccattagttaaatgtattggattccaagaattt
ttgctgaatgggccgacagatacaatgggtatgattgttacagcagatggtctttcatta
caccaacctttgacgtggtcagagagtattttgtcagttgcatgtagttatccatatatt
ttggttttaggcaatagtactgttactatacataatctaattgaccaaaaacaaaaacaa
accatgctttttacaggtggagtttttattaatgattacaatggtgatgtttatattgca
acacaaaaatctgtaatggcttttattgctgttcctttaagtaagcaaatacaactgcta
gttgataacaaacgtgtggaagaagcatttgatttactccaagttgctagaaagctcaaa
caatgcccacctaattttgataagcaaatccaaattcaagctgcatttatatattttttg
gaaaataactttgaaaaagcatacaagttgtttgttgagagctttatggatcctcgtgaa
cttatagtattgtatcctgatattatgccaagaaactcaacttatattccttcaaaacct
tcatatcattcaattccagatataatgtttgttgtaaaaaatagtcaaactgcattgaaa
gaatctaaattattacttttaaaatatttagaagttattagaaaacatcatagtgattta
agttttgagattgatactgcacttgctaagatttatatagagtttgatcatccttctcta
tttgaatttctttcaaaagaaaataatgcttttgttgaagaaaccttgtcttggctccaa
aagtataatcagtttcaatgtatggctttctattttgtgtatctaaaacaaccacagaaa
gctatggacatatggaacaaacttcaaagtaataaacttcatgatgataaatacactggt
atgtcatgtattattgactatttattaagtgtagataacacagagctaatatggaacaat
atcaagtggttgttagataacaatgaaacattagctgtaaaagtttttattaatcgagac
atcttcagccatgttcaagtttttaattttttacataagtttcctattgcacttcaagtg
tatttagagtatctagttatagataagaaaattgatgaagaggtatttcacacccattta
gcaggtatgtatatagaccatgttttaaaacttttaaatgagaataatcaaataaatgaa
ataaatcatgaaaggaaaagacttcaaagtttactagaaacttcttctaaatacaaaata
tctactttactaaataaaatatctgaataccctttgtaccatgaaagtgctattctctat
ggaaaacttggtcaacatgataaagccatgaaaattttagtatacaaactaaaagatttt
gttgctgcagagcgatactgtgacatcatttctgtaaataaagataacattttcaaacaa
catctttttcatatgcttcttaatgtttacttgaatcctgttgaaaatgaagatggtgtt
agagctgaacatcttgtagagccaacaattcaactacttaataaaagacgagctgaattc
aattcggtttctgtcttgaaaattttaccagaagattggtcagtgggattaattcaacct
tttttgtctggaactctgcgagaaatgttatggaaagaaagaaaatcaaaaatagagtca
agactgtgtagtctgcattatttaaaaaccaaattttctaatatttctttacaatctgga
tattttaaaatgacagaagattcatgttgtgacttttgtttgcgcccctatactgaacct
atattagtatgttatcctaataaaaaaggttttcatcctcactgttgtaaagataaatat
atatgtccagcaactaaaataaattttaaatga
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