Hydra vulgaris (swiftwater hydra): 100204338
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Entry
100204338 CDS
T01080
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03008
Ribosome biogenesis in eukaryotes
hmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100204338
09123 Folding, sorting and degradation
03018 RNA degradation
100204338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100204338
03009 Ribosome biogenesis [BR:
hmg03009
]
100204338
03016 Transfer RNA biogenesis [BR:
hmg03016
]
100204338
03036 Chromosome and associated proteins [BR:
hmg03036
]
100204338
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100204338
mRNA degradation factors
5'-3' decay
5' exonucleases
100204338
Ribosome biogenesis [BR:
hmg03009
]
Eukaryotic type
Pre-60S particles
RNases
100204338
Transfer RNA biogenesis [BR:
hmg03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100204338
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100204338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
100204338
NCBI-ProteinID:
XP_047138728
LinkDB
All DBs
Position
8:35748975..35825105
Genome browser
AA seq
1226 aa
AA seq
DB search
MGVPKFYRWLSERYPCLSQTIREHKIPEFDNLYIDMNGIIHPCSHPNDEDPHFQITEEEI
MMNIFDYIETLFRIIKPKKNFFMAVDGCAPRAKMNQQRSRRFRTAKEVGISIENAIQRGE
TLPKGDSFDSNCITPGTEFMDRLHQQLKYFINYKISTDPLWKHCVVHFSGHNVPGEGEHK
IMDYIRYCKSKPDYDPNTRHCLYGLDADLIMLGLSVHEPHFCLLREEVRFGAKSNIVLSP
GDQVFHLLHLSLLREYLDLEFSSMKESLEFEYDLEKIIDDWIFLGFLVGNDFVPHLPHMH
INHDALPYFYSVYKDFLITADGYINEGGVVNLTRLKQFFGCVSDFDYELFAEWKKTSSGI
KSKNEENDKKIFSLENPDGTEGFANAFANFSFNGSLQKKSKKLIKVKGSDKDLAIVDEFT
EHKQNYYAEKFGMNVKNNIEMQTICSNYVTALQWISHYYFNGLQSWSWYYPYHYSPYMSD
LASFELEKISMDLGTPFRPFEQLLAVLPAASGKLLPKAFQNLMVEETSTIIDYYPSDFQT
DLNGKKQQYEAVVLIPFIDEKRLLDAMAQNYDQLTEEEKSRNTFGNAYEFMYDENLNLTY
PSSHPGLNDITPCKVKQVEISQDLYRLKINDIKKGLSKGAQLDIYSPGFPTLKHLKHKCF
FTQAGIKVFKHKSKIENAIIKITEQKSMDIEETANLMIGKSVFVEWPYMVEAMVTSVMNE
DLCYYLTNENELAMKMVDGEDYSNFKKEIAVISSYHLFERGINLGDVTTIVAAKLLLGEK
YKFDGGKASLVKEWSQTPTFYPLQTIVQDVSVCKREKNVIKSTSDLFPVHSPCVILSQPH
YGFTGKVLQYNEKNDHINVLINILKEPNFSETMFESLSTEYVSSHSIAKQMQIPIDVLSR
ITGDVFVTKGSNQTGIMSYNLGLKIKYTKKNLEMLGYARRSAFGWFYSASAVNLLNEYMK
KFPEVFRGLESMASSDVDSFNFSDLFPQQSEDYLDHVSLYLKNLPCYDGQLIRCQSNVLE
EPVVNRIEQAVNEIKDQQKKSLKFQVKPENLFLPTDSLYNVPQDREIFLFDRVVNIQNGI
NVPFGMRGTVIGIHKVLIDENSIRAKSELRYEVLFDDVLLGASVRSKDPRGYILKADSLI
GLIPEKTKNDRRNLHNASLNFQWKKVPGIGWRNYSTYRSSTAFCFKRPHINLHQRNFFSI
IKPSRSSIISVAFGGLLVSSMYLFRV
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcctaagttttatcgatggctttcagaaagatacccttgtcttagtcaaaca
atcagagagcacaagattcccgaatttgacaacttatatattgacatgaatggtattatt
catccatgttctcatccaaatgatgaagacccgcatttccaaattacagaagaggaaatt
atgatgaacatatttgattatattgaaactttgtttcgaatcattaaaccaaagaaaaat
ttctttatggcagttgatggatgtgcacctcgtgcaaaaatgaatcaacaaagaagccga
cgctttagaacagctaaagaagttggaatttctatagaaaatgctattcaacgaggagaa
accttacctaaaggagactcttttgactctaattgcattactccaggaacagagtttatg
gaccgactacatcaacaactcaagtactttattaattataaaatttcaactgatcctctt
tggaaacactgcgttgttcacttttctggacacaatgtacctggtgaaggagaacataaa
ataatggactacatacgctattgcaaatcaaaacctgattatgatccaaatacaaggcat
tgtctttatgggctggatgctgatttgatcatgcttggtcttagtgttcacgaacctcat
ttttgtttactgcgagaagaagtcagatttggtgccaaatcaaacatagtgttatctcct
ggagatcaggtctttcatctgctgcatttatcattgcttcgtgaatatcttgaccttgaa
ttttcttctatgaaggagagtcttgagtttgaatatgatttggaaaaaattattgatgat
tggatttttcttggctttcttgttggaaatgattttgtaccacatttgccacatatgcat
attaatcatgatgctttgccttatttctacagtgtttataaagattttctgattactgca
gatggttatatcaatgaaggaggtgttgtaaatttgacaagactaaagcagttttttggt
tgtgtcagtgattttgattatgaactctttgctgaatggaaaaaaacctcaagtggtata
aaaagtaaaaacgaagagaatgataaaaagattttttcattggaaaatccagatggaaca
gagggctttgcaaacgcatttgcaaatttttcatttaatggaagcctgcagaaaaagagc
aagaagttaataaaagttaaaggttcagataaagatctagcaatagttgatgaatttaca
gaacacaaacaaaattattatgcagaaaaatttggtatgaatgtcaaaaacaacattgag
atgcagacaatatgttcaaattatgttacagcattacaatggatatcgcactattacttc
aatggtttgcaatcgtggagttggtattatccttatcactattccccatatatgtctgac
cttgccagttttgaattagagaaaataagtatggatcttgggacaccatttcgaccattt
gaacagcttttagcagttttacctgctgctagtggcaaacttctacctaaggcgtttcag
aacttaatggtcgaagagacatcaacaataattgattattacccctcagactttcaaaca
gatttaaatgggaaaaagcagcagtatgaagctgttgttcttataccatttatagacgag
aagcgtttacttgatgccatggcacaaaactatgatcaactgacagaggaagagaaatct
cgcaacacctttggaaatgcttatgagttcatgtatgatgaaaatctcaacttaacttat
ccttcatctcatcctggtttaaatgatattactccatgtaaagttaaacaggttgaaatt
tctcaggacctttacagattaaagatcaatgatataaagaaaggtctgtctaaaggtgca
cagcttgacatatattcaccaggatttccaacattaaaacacctaaaacataaatgcttc
tttacacaggctggtatcaaagtatttaaacacaaaagtaaaattgagaatgcaattatt
aaaataacagaacaaaaaagtatggatattgaagaaacagctaatttgatgattggaaag
tcagtttttgttgaatggccatatatggttgaagccatggtaacctcagtgatgaacgaa
gatctttgctactatctaactaatgaaaatgagcttgctatgaagatggttgatggagaa
gattattctaattttaaaaaggaaatagctgtcatttcttcatatcatctatttgagcga
ggaataaatctaggagatgtgaccacgattgtggcagctaaattgcttttgggtgaaaag
tataaatttgatggaggtaaagctagtttagtaaaagaatggtcccagactcctactttt
tatccattgcagactatagtacaggatgtttctgtttgcaaaagagaaaagaatgttatt
aaatctacatcagacttgtttcctgttcattctccgtgtgttatcttgtcgcaaccacat
tatgggttcacaggaaaagttcttcaatataacgaaaagaatgatcacataaatgtccta
attaacattctgaaagaaccgaatttttcagaaacaatgtttgaatctctttcaacagaa
tatgtctcttctcactcgattgcaaaacaaatgcaaattcctatcgacgtactttcaaga
atcactggtgatgtatttgtaacaaagggtagtaaccaaactggtattatgtcttataac
cttggtttaaaaataaaatacacaaaaaaaaacttagagatgctaggttatgcaagacgc
tctgcctttggttggttttattcagcatctgcagttaatcttctgaatgaatacatgaaa
aagtttccagaagtttttcgtggtttagaatctatggcttcatcagatgttgacagtttt
aatttttctgatttatttccacagcaaagtgaggattacttggatcatgttagcctttat
ttgaaaaatctaccatgttatgatgggcaattaattaggtgccagagcaatgttctagag
gaacctgttgtgaatcgaatagagcaagctgttaatgaaataaaagaccagcaaaaaaaa
agtttgaaattccaagtgaaacctgaaaatttatttcttccgactgattcactatacaat
gtcccacaggacagagaaatatttttgtttgatcgcgttgtaaatattcaaaatggcatt
aatgttccatttggtatgagaggaactgttattggaatacacaaagttttaattgatgaa
aatagtattcgtgcaaaaagtgagctacgatatgaagtactttttgacgatgttttgctc
ggtgcttctgtgaggtcaaaagatcctcgtggttatatattgaaagcagattctttaatt
ggattaattccagaaaaaactaaaaacgatcgtcgtaatttgcacaatgcatctctaaat
ttccaatggaaaaaagtacctggcattggttggcgaaactacagtacatatagatcttcg
acagctttttgctttaaaaggcctcatataaacttacatcaacgaaatttcttttccatt
atcaagccatctcgctcatcgattataagcgttgcttttggtggacttttagtttcgtct
atgtatttatttcgtgtatga
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integrated database retrieval system
