Hydra vulgaris (swiftwater hydra): 100205185
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Entry
100205185 CDS
T01080
Name
(RefSeq) nephrocystin-3
KO
K19360
nephrocystin-3
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hmg03037
]
100205185
Cilium and associated proteins [BR:
hmg03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
100205185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NPHP3
TPR_12
TPR_10
TPR_1
TPR_8
NPHP3_hel
TPR_MalT
TPR_7
NPHP3_N
AAA_22
AAA_16
SHNi-TPR
NACHT
SSXT
SPAM
Motif
Other DBs
NCBI-GeneID:
100205185
NCBI-ProteinID:
XP_047125332
LinkDB
All DBs
Position
15:complement(30235483..30308610)
Genome browser
AA seq
1248 aa
AA seq
DB search
MGSSVSRKKYNANRIAAVTPSYSTSEQTNNAVEIHVPDHVKQKSKSLSLLSFTKKNSLHV
QKTTSFNLTATSLNTENQIERLLKTIEQLKVDHENEVLKIKTEKKQLEMKVNQLQNELKI
VNTALPKLRADKQIAKSGESDALKRCSAFKNERDKIQVELENAKKQIQQLLKENQSLMHL
IQKPSNRQDLQPVVDHHQHLITDWLFANHSGIESQVGVHTSKAESIVTVNESIPNLDIKG
LSETLKNLLSKLHNKWYGVPLKNVFMLHIEYQKNMESAAKLILDGCRNLALQFEMGGHLL
NYFCYETGSQYKNEESVRLEFMKHSDIFLLLTSLDNSQSLMQEFLASEKICIIVGEIREE
LLKSIKEDKRKLHLLPISYDNESLPSMCIKKISEICILFVEKQENQEVLSSDNCSKEERL
YYPSISFDVYNHKEQQTILNQHCKFQGLCSNIGKEIAYLDSYISQEGPAQPLLLSGPAGS
GKSFILSNWVIHLEQSYPNLCVLYHFASIGSINSCDPIQLLRRFSFILLEQSPPSCEESH
LIKEFPLWLEKSCNKFKNGVVIVIDGADLIRNNAEFLKWVLDPLPVPVRVVFSVNSNIYP
QAWLKWPTLEIQGNASDGLFKLKSMFSNHTQVIEEVVKTLFPNGVCTESASNNLSSCLFR
NTLKALHINTKLDLSKLLNKCLTVKKIEDFFYLIIKQIIKENNKELVFRILCLLAISYNG
LSMMELTELCHEYKPADVCFVVSLTSKLYLTWDVCGLVQLTRIQLKEEIVKYLGLNSDNA
NEYLTSLRILIVKVFMQKFQSGFITYRVADELPWQLFQINCKQDLYICIESPTLLTHYWQ
KGKLSTLIHYWKSLEVDLAGIYQIYSEKLKISENDNNYRQQMLTYDILGDFMQEYKQYKF
AQQSFEKSIELKESHLEPDSIEFGESYFRLAKLFTHWKKYQTAETYYQQVLDINKDRDNQ
QKTSYAKILEGLAILYFFQEKFVQAESCQKQVMLIRKKHASEMENIKLALLECFHLSKTL
VEENLVEENLQFYAEIGSVYFNINQPEDAIQILQQSLDMYFTLYGECNSNVAEIMFKLSF
VYQSLNMLDKAQPLLEKAFEVFIQNFSADNTNVQMALKNLTKLYKKKKMDGQLERLFRVM
VDMHEKESNFSPSFASSLNVLAVHLSKTGKYKEALPLYYRAVLIYNDHVGFQHANVTEIL
KNMAKCFYEQEDFNIAANMYKLSMESNRSIDQFLISYRSVIEQFSNSS
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtagtgtctctcgtaaaaagtataatgcaaaccgtattgctgcagttactcca
tcttattccacttcagaacaaacaaataatgcagtagaaatacatgttcctgatcatgtt
aagcaaaaatctaaatccctttctttgctctcttttaccaaaaagaattctcttcatgtt
cagaaaacaacaagttttaatttaactgctactagtttaaatacagaaaatcaaattgaa
agacttttgaagacaatagagcagctaaaagttgatcatgaaaatgaagtcttgaaaatt
aaaacagaaaaaaagcagctcgaaatgaaagtaaaccaattgcaaaatgaactcaaaatt
gttaacacagctttacccaaactgagagctgataaacaaattgcaaagagtggtgaatcg
gatgcattaaaaagatgctctgcttttaaaaatgaaagagataaaatacaagttgagctt
gaaaatgctaaaaagcagattcaacagttgttgaaagaaaatcaaagtttgatgcatctt
attcaaaagccatcaaatcgacaggatttgcaaccagtggttgatcatcaccagcatctt
attactgattggttgtttgctaatcatagtggtattgaaagccaagttggagtccatact
tcaaaagctgaaagcattgttacagtaaatgaatcaatacctaacctagatattaaaggt
ttaagtgaaacactgaaaaatttattgtctaagctacacaataagtggtatggcgttcct
ttaaaaaatgttttcatgcttcatatagaatatcagaaaaatatggaatctgctgccaaa
cttattttagatggctgtcgaaatttggcattgcaatttgaaatgggtggtcatttattg
aactacttttgctatgaaactggatctcaatacaaaaatgaagaatcggttcgtctcgaa
tttatgaagcatagtgacatttttctgctattaacatctctagataatagtcaatcatta
atgcaagagttcttggcatcagagaagatttgcatcatagttggtgaaattagggaagaa
ttattaaaaagtataaaagaagacaaaagaaagcttcatttattaccaataagttatgat
aatgaaagtttaccttccatgtgtatcaagaagatttctgaaatttgtatattatttgtt
gaaaaacaggaaaatcaagaagtattaagttcagataattgttctaaagaagaaagatta
tactatccttcaataagttttgatgtatacaatcataaagaacagcaaaccattttaaat
caacattgcaaatttcagggtctctgttccaatattggtaaagagatagcatatttagac
tcttatatatcacaggagggacctgctcaaccgctattgctcagtggacctgctggttcc
ggaaagtcattcattttatcaaattgggtcatacatttagagcagagttatcccaacttg
tgcgttttgtatcactttgcctccataggttcaataaacagttgcgatcccattcagttg
ttgcgtcgtttttcttttatcctattagaacaatcaccaccttcatgtgaggagagtcat
ttaatcaaagagtttcctttgtggttagaaaaatcatgcaataaattcaaaaatggtgtt
gtcatagttatagatggtgctgatttaattagaaataatgctgagtttctaaagtgggta
cttgaccctttgcctgtacctgtaagagttgttttttctgtcaatagtaatatttaccca
caagcttggttaaaatggcctacattagaaattcaaggaaatgcctctgatggattgttt
aaattaaagtcaatgttttcaaaccacacccaagttatagaagaagtagtaaaaacttta
tttccaaatggtgtttgtactgaatctgcttctaacaatttatcaagttgtttgtttaga
aatacattaaaagcattgcacattaacacaaaattggatttatccaagctacttaataaa
tgcttgacagtaaaaaaaattgaagattttttttacttaatcattaaacagattataaaa
gagaataataaagagttagtttttaggatactttgtttactagctatatcttacaatggt
ttaagtatgatggagctaacagagttatgtcatgaatacaagccagcagatgtttgtttt
gtagtttcattaacatcaaagttatatttaacatgggatgtttgtggattggtgcagtta
actagaattcagcttaaggaagaaattgtaaagtaccttggtttgaattctgataacgcc
aatgaatatttaacatctcttcgcattttaatagttaaagtctttatgcagaagtttcaa
tctggtttcataacataccgtgtcgctgacgagttaccatggcaactttttcagattaat
tgtaaacaagacctgtatatctgtattgaatcacctacattgcttactcattattggcag
aaagggaaattatcaacgttgatacattattggaagagtttggaagttgatctagcagga
atttatcaaatttactctgaaaagttaaaaatatctgaaaatgataacaattacaggcag
caaatgttaacttatgatattcttggtgattttatgcaagaatacaagcagtacaagttt
gctcagcaatcattcgaaaaatcaattgaattaaaagaaagtcatttagaacctgacagc
attgagtttggagaatcatattttagacttgcaaagctgtttacacattggaaaaaatat
caaactgcagaaacttattatcaacaagttttggatatcaataaagatcgcgataatcaa
cagaaaacatcttatgcaaaaattctagaaggcttagctattttgtatttcttccaagaa
aagtttgtgcaagctgagtcgtgtcaaaaacaagttatgcttattagaaaaaaacatgca
tctgaaatggaaaacattaaacttgctctattagagtgtttccatttgtcaaagacatta
gttgaagaaaatttagttgaagagaatttacagttttatgcagaaattggttctgtctat
tttaacatcaaccaacctgaggatgcaattcagattttacagcagtcactggacatgtac
tttacactatatggtgaatgtaactcaaatgtggctgagattatgttcaagctgagtttt
gtttatcaatctcttaatatgttagacaaggcacagcctttacttgaaaaggcatttgaa
gtattcattcaaaatttttctgctgataacactaatgtacaaatggctttgaagaatctt
acaaaactttacaagaaaaagaaaatggatggtcagttagagcgcctctttagagttatg
gtagacatgcatgaaaaagaatctaacttttcaccttcatttgcatcgtcattgaatgta
ctagctgttcatctaagcaaaacgggaaagtacaaagaagccttgcctttatattatcgt
gctgttttaatttacaatgaccatgttggcttccaacatgcaaatgtaacagagatttta
aagaacatggctaagtgtttttatgaacaggaggactttaacattgctgcaaacatgtac
aagctatcgatggaatcaaatcgtagcatcgatcagttcttgatcagttatcgatcagtt
atcgaacagttctcgaacagttcttga
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