Hydra vulgaris (swiftwater hydra): 100205751
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Entry
100205751 CDS
T01080
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100205751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100205751
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100205751
mRNA degradation factors
5'-3' decay
Lsm complex
100205751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Bac_small_YrzI
Motif
Other DBs
NCBI-GeneID:
100205751
NCBI-ProteinID:
XP_002167435
UniProt:
A0A8B6XSI5
LinkDB
All DBs
Position
4:complement(42699905..42717526)
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AA seq
140 aa
AA seq
DB search
MEGFMHYLKTRTASLLTELDKRLLVVLRDGRTLIGELRSVDQFANVVLENTIERIHVGNK
YGDISRGVFIVRGDNIVLLGEMDALKEKSSGLKEVTVEEILEAQRVELLQKEQLEKRYNY
LRHERGLAPFMPDMGLDDYA
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
atggaaggatttatgcattatttaaagacacgtactgcaagccttttaacagaacttgac
aaaagacttttggtggtattaagagatgggcgtaccttgattggcgagttacgctcggtt
gatcaatttgcaaatgtggtccttgaaaatacaatagaaagaatacatgtgggaaacaag
tatggtgacatatcacgtggagtctttattgttcgtggtgacaacatagtgttgttagga
gaaatggatgcattaaaagaaaaatcaagtggtttaaaagaggtgactgtcgaagaaatt
ttggaagctcaacgcgtagaacttcttcaaaaagaacaattagagaaaagatataactat
ttgcgtcacgaaagaggtttagcaccttttatgcccgatatgggtcttgatgattatgca
tga
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