Hydra vulgaris (swiftwater hydra): 100205876
Help
Entry
100205876 CDS
T01080
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4 isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100205876
03041 Spliceosome [BR:
hmg03041
]
100205876
03036 Chromosome and associated proteins [BR:
hmg03036
]
100205876
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100205876
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100205876
mRNA cycle factors
Common to processing body (P body) and stress granule
100205876
Spliceosome [BR:
hmg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100205876
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100205876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
BubE
Motif
Other DBs
NCBI-GeneID:
100205876
NCBI-ProteinID:
XP_047134381
LinkDB
All DBs
Position
6:18255661..18317872
Genome browser
AA seq
431 aa
AA seq
DB search
MMKGLDLVVCAQTGSGKTAAFLIPIIAKVLSKPKDAQVLSKPTTEKPYALILTPTRELAI
QIHRDAVLLTKKTHIKCCCAYGGKYFSENIIEISAGCDLLIATPGRILHLCRSIKGLLST
VKIFVLDEADYILGNKFVEDIEEINHILPPINKRQTVLFCASIPGKFEKAVYGSKSIIHK
FIKSDFKEVFKEFLKKEYIFVCVGRIGGTLNFIAQSFFKVEPDTTKLKILTDILKDESKD
NKKTIVFLETKEDAAAMAMFLCSCGFQVTVFHKDRCQKDREYALHQFNTGVKTIMICTSV
SARGLDIVEVKTVINYDLSSDISTYLYRIGRTGRAGHAGKAISFFVKGRDEGIARGLVKN
LSMLYIFSLIRMFLSGLMILQKLRMEQIVDLEEESMPQKTQDIMCLPKFFTLYKYRMVVK
FSDYLNFVFLF
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaggattagatctagttgtctgtgcccaaacaggttcaggaaaaacggcagct
tttttaattccaattattgcaaaagttctatcaaaacctaaagatgcacaggttttatca
aaacctacaactgaaaaaccttatgctctaatacttacaccaacacgagaacttgcaatt
caaatacatcgagatgctgtgctgttgacaaaaaaaactcacataaaatgctgttgtgct
tatggtgggaaatattttagtgaaaatatcattgaaataagtgctgggtgtgatctgtta
attgcaactcctggtagaatactacatctttgtagatctataaaaggtttgttgtcaaca
gttaaaatttttgttttggatgaagcagattatatccttggaaataagtttgttgaagat
attgaagaaattaatcatattttgccaccaatcaataaaagacaaacagttttgttttgt
gcctcaatccccggcaaattcgagaaagctgtttatggatcaaaatcaattatacacaaa
tttattaaatcagattttaaagaagtttttaaagagtttctcaaaaaagaatatattttt
gtttgtgtaggcagaattggtggaacacttaattttattgctcagtctttttttaaagtc
gagcctgatacaacaaaattaaaaatacttacagatattttaaaagatgaatcaaaggat
aataaaaagacaattgtgtttttggaaaccaaagaagatgcagctgcaatggctatgttt
ttatgtagttgtggttttcaagtgacagtctttcacaaagatcgatgtcaaaaagataga
gaatatgcattacatcaatttaacactggtgtcaaaacaataatgatatgcacaagtgtg
tctgcaagaggtcttgatattgttgaagtcaaaactgttatcaattatgacttgtcttct
gatatatcaacttatctatacagaattggacgaacaggaagagctggtcatgctggaaaa
gccatttcttttttcgttaaagggcgtgatgaaggtattgcaagaggattagtaaaaaat
ctatcaatgctgtatatttttagtctgatcaggatgttcctgagtggcttgatgatattg
caaaaactgcgcatggaacaaatcgtggacctcgaggaggaaagtatgccgcaaaagaca
caagatataatgtgtcttccaaagttttttacgctgtataaataccgaatggttgtcaaa
ttctctgattatttaaattttgtttttcttttttaa
DBGET
integrated database retrieval system
