Hydra vulgaris (swiftwater hydra): 100206141
Help
Entry
100206141 CDS
T01080
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100206141
03036 Chromosome and associated proteins [BR:
hmg03036
]
100206141
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100206141
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
100206141
SLIK complex
100206141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
CHDCT2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100206141
NCBI-ProteinID:
XP_047139865
LinkDB
All DBs
Position
9:complement(13577005..13681237)
Genome browser
AA seq
1711 aa
AA seq
DB search
MTGFTSESSYSSNEEKQDDKNSWEEDSIDSSVADHDEQEVEIEDSDNEEVGEKNKDATNS
GSSSSRSSSESSNEDEVKRPVKKDNRVWEDNPDIYGIRRSSRQKKEPQRLNVMSDDSGSD
YDKKKKKKKSDNWVPTLSGSESVESDSSYEIPQRTMHKKRNIAQIKQKCKRVQYADSDSD
DFGKKRVKNKREFKKTNARLSSNKVSYKEDSEDETDPDDLIELEETSNSTPNDVETIEKV
TRHRIGVPGATGSNTTIYAQQEESKDQIQKVTGETEVQYCIKWKGWSHLHNTWESKETLL
QQKCAGMKKLENYIKRMDDIEKWKKISSPEDIEYFECQQEMNEEIHKQYQQVERIIAHQF
NSESSSTYPDYLCKWQGLPYSDCSWEDGSLTARFFQTQIDEYLDRERSETTPNRNTKCLR
TRPKFVVFKSQPAFLGNQTLQLRDYQLDGINWLVHAWCREVSCILSDEMGLGKTIQTISF
LSYLFHTYSLYGPFLIVVPLSTMDAWAREFRLWAPEMNVIVYIGDANSRQSIQEYEWCNK
KTKRLKFNVLLTTYEMLLKDKEKLGSIYWACLMIDEAHRLKNDDSLLYRMLIDFRTNYRL
LITGTPLQNSLRELWALMHFIMPNQFNSWEDFDSKYSVSDKDGLQKLHRDLEPYLLRRVK
KDVEKSLPAKVEQILRVEMSQIQKQYYKLILTRNVHELCKELKGKFTGLLNIIVELKKCC
NHSNLIKPSELCLSDPSMLQTLIRGSGKMILLDKLLCRLKETGHRVLIFSQMVRMLDIIA
DYLCIKRFQFQRLDGSIRGDKRKQALDHFNAEGSQDFCFLLSTRAGGLGINLASADTVII
FDSDWNPQNDLQAMARAHRIGQKNQVNIYRFVTKNTVEEDIIERAKKKMVLDHLIIQRMD
TTGRRILSKSNNALSSASVPFKKEELSSILKFGAEELFKDHDHESDQKLHAMDIDEILQR
AETQDTVDSINSVSEELLSQFKVVNYAAFNEEDIKAELTTPIQKLWNEIIPEEDRKQVEN
ELEEGKNSTLKPRSRKTVVKMHVGVESKKVKSKEIVDTDTSTDSDSGNEDAKVLKKPSRK
SKVVSKDEIKGFSDAEIRRFIKSFKKFSRPMTRLDSIAEDAELTEKRLSELQNLGTLLKL
SCEQAVKEYQEKLHQDENFDGRKKGATLKIGGVTINAPSVLKAEIDLEPLSLCLPNDHKN
QKSYRLTTPTRSVHWGIPWGVVEDSMLLVGILVHGLGNWDAIKNDHSLMLNGKILPNNNG
KPQDKHLQSRAEYLLKLLKEQNNQLDEKSKKKKKIHSKPSVVKQETDLQIDIEEKNLKNK
KDITKNTRNSIPRKKQLLQPTSESVPIETGSSIVIKEINDMSDSIFKKCKEKMRPERKSL
QLLHTPDESMPQEDQVNTTKRCLLKIGDHIEKSLDEYNINTLEQDTWRSNLWSFVAKFTE
LSPAKLHKLYRTACRKRDTQKDEDKKEAEKIKINQAREVVKNVPPDRLQLEAARKKTLGL
NSNSNKTLKSERIPQKKPNELQKTASTKTDSNIIEEKLTKRDVSNRSQQLSSSSSDNINN
RNRFKTNEYNNTSIRDEKCRTTQVQTTYREWKEAQNNKNIPFDEKPCKDKLYNSRPDHYE
NTDKKPYDGNKNSERSHFPIYDPRSRPRQYGELNSEHADHIYTSPSDSQSPLYYGDSRKR
TRTSSNNSDISNFSNSKKFYAGVYHNSRDDS
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgactggatttacatctgaatcaagttatagtagcaatgaagaaaagcaagatgataaa
aactcatgggaagaggattcaattgactcaagtgttgctgatcatgacgaacaagaagtt
gaaatagaagattctgataatgaagaagttggagaaaaaaataaagatgccactaattct
ggtagtagttcttccagaagtagcagcgaaagcagtaacgaagatgaagtgaaacgacca
gtaaaaaaagataatagggtgtgggaagacaatccagatatatatgggatacggcgatca
agcagacaaaaaaaagaaccacagcgtctaaatgtaatgtcagatgacagtggatctgat
tatgataaaaaaaaaaagaaaaagaaatcagacaactgggtcccaactctaagtggtagc
gaaagtgttgaatcagattcaagttatgaaattcctcaaaggactatgcacaaaaaaaga
aatattgctcagataaaacagaagtgtaagcgtgttcaatatgctgattctgattctgat
gattttggcaaaaaaagagttaaaaacaaacgagaatttaaaaaaacgaatgcgcgattg
tcatcaaataaagtgagttataaggaggatagtgaagacgaaactgaccctgatgacttg
attgaacttgaagaaacttctaactcaacaccaaatgatgttgaaaccattgaaaaagtc
acaagacacagaattggtgttccaggagctacaggatcaaatactactatttatgctcaa
caagaagaatctaaggatcaaatacagaaagttactggggaaacagaagttcaatattgc
attaaatggaaaggttggtcccaccttcataatacctgggaatcaaaagaaacccttctt
cagcaaaaatgtgctggaatgaagaaattagagaattatattaaaagaatggatgatata
gaaaaatggaaaaagatttcttcacctgaggacattgagtattttgaatgtcaacaagaa
atgaatgaagaaattcacaaacaataccagcaagttgaaagaatcatagctcatcaattt
aattctgaatcatcatcaacatacccagattatctttgtaaatggcaaggcctaccttat
tcagattgctcctgggaagatggtagtctaactgcacgtttttttcaaacacaaattgac
gaatatttagatagagaaagatcagaaactactcctaacagaaacaccaagtgtttgcga
acgcgaccaaagtttgtagtttttaaatcacaaccagcattccttggtaatcaaactctt
caattgcgtgattatcaacttgatggcataaattggttagttcatgcatggtgtcgcgaa
gtttcttgcatattatctgatgaaatggggctgggtaaaacaattcaaacaatttcattt
ctttcttatttattccatacttattcactgtatgggccatttctaattgttgtaccactt
tcaacaatggatgcttgggccagagaatttcgtttatgggctcctgaaatgaatgttatt
gtttatattggtgatgcaaattcgaggcagagtattcaagagtatgaatggtgcaacaag
aaaacaaagaggctaaagttcaatgttttgttaacaacatacgagatgctgcttaaagat
aaggaaaagcttggatctatttattgggcatgcttaatgattgatgaagcacatagatta
aaaaatgatgactcattactatatcgaatgttgatagattttcgaaccaactatcgcttg
cttataactggaactcctcttcaaaattccctcagagaattgtgggcattaatgcatttt
atcatgccaaatcagtttaattcttgggaagattttgatagtaaatattctgtatctgat
aaagatggtctgcaaaaacttcatagagatttggaaccttacttattacgaagagttaag
aaagatgtagaaaaatcattacctgcaaaagtagagcaaattcttcgtgttgaaatgtca
cagatccaaaaacagtactataagttgattcttacacgaaacgtccatgaattatgcaaa
gaattaaagggaaagtttactggcttgctaaatataatagttgaacttaaaaaatgttgt
aatcattctaatttaatcaaaccgtcagagctgtgtttaagtgatccttctatgttacag
acactaattagaggaagtggtaaaatgattttgcttgataagcttttatgtcgtttgaaa
gagacaggtcacagggttttaattttctctcaaatggtacgcatgcttgatatcattgca
gattacctttgtattaaaagatttcaatttcagagactagatggttctatacgtggagat
aaacgcaagcaagctttagatcatttcaatgctgaaggatctcaagatttttgtttcttg
ctgtcaactcgtgcaggtggtctaggtataaatttagcctctgctgatactgtaattata
tttgattctgattggaatccacaaaacgatttacaggctatggcacgagctcacagaata
ggtcaaaaaaatcaagtaaacatttacagatttgttacaaaaaatactgttgaggaagat
attattgagcgtgcaaaaaaaaagatggttcttgaccatttgattattcaacgaatggat
actactggaagaagaattctttcaaaatctaataatgccctttcttcagcaagtgttcca
tttaaaaaagaagaactttccagcattttaaaatttggagctgaagagttgttcaaggat
catgatcacgaatctgatcaaaagttacatgcaatggacatagatgagatactgcaacgt
gctgaaacacaggatactgttgattctataaacagtgttagcgaagagctgttatctcag
ttcaaggtagtgaactatgctgcatttaacgaagaagatattaaagcagagttgacaaca
ccaatccaaaagctttggaatgaaattattcccgaagaagacagaaaacaagttgaaaat
gagcttgaagaaggaaaaaatagtacattaaaacctagaagtcgtaaaacagttgtaaag
atgcatgttggtgttgaatccaaaaaagttaaatctaaagagattgttgatactgacaca
tcaactgattctgactctggtaatgaagatgctaaagttttaaaaaagccaagtagaaaa
tcaaaagttgtatctaaagatgaaattaaaggtttttcagatgctgagatcagaagattt
attaaaagtttcaaaaaattttcaagaccaatgacaagactggattctattgctgaagat
gctgaactaactgaaaagcggttaagcgaactccagaatcttggtactttactaaaattg
tcatgtgagcaagctgttaaagaataccaagagaagttgcatcaggatgaaaattttgat
ggaagaaaaaaaggtgctacattaaagatcggaggtgttacaattaatgcaccatcagtt
ttaaaagcagaaattgatcttgaaccgttatcactttgtttacctaatgatcataaaaat
caaaaaagctatagattaactaccccaacgcgtagtgttcattggggcataccttggggt
gttgttgaagattcgatgctgcttgttggaattttagttcatggtcttggaaactgggat
gccataaaaaatgatcattctcttatgttaaatggaaaaattttacctaataataatggt
aaaccacaagataagcatctgcaatcaagagcagagtaccttttaaaacttcttaaagaa
caaaataaccaacttgatgaaaaatctaaaaagaaaaagaaaattcattcaaaaccttct
gttgttaaacaagagacagacttgcagattgatatagaggagaagaacttaaaaaacaag
aaagatataacaaagaatacacggaactctatacctcgcaaaaaacaattattacagcca
acatctgaatcggttcccatagaaacagggtcttcaatagtaataaaagaaatcaatgac
atgagtgatagtatttttaaaaagtgtaaagaaaaaatgcgaccagaacgtaaatcactt
caacttcttcacactcctgatgaaagcatgcctcaagaagatcaagttaatactaccaaa
cggtgtttgctaaaaattggtgatcatatcgagaagtctcttgatgaatacaacataaat
acgttagagcaagatacctggagaagtaacttgtggtcatttgttgcaaaatttacagaa
ctcagtcctgctaaattacacaaactttatcgaacagcatgtcgcaagcgagatacacaa
aaggatgaagacaaaaaggaggctgagaaaataaaaataaaccaagcacgagaagtagtt
aaaaatgtaccccctgatcgattacaacttgaagctgctagaaaaaaaactttaggtctt
aattctaattccaataaaacactgaaaagcgaaaggataccacaaaaaaaaccaaatgag
ttgcaaaaaaccgcttctacaaaaactgactcaaatattattgaagaaaagttgacgaag
cgagatgtttcaaatcgctctcaacaattatcgagttcatcgagtgataacatcaataat
cgaaatcgttttaaaactaacgaatataacaatacgtcaatccgagatgaaaagtgtcga
actacacaagttcaaactacttatcgtgaatggaaagaggctcaaaataataaaaatatt
ccttttgatgaaaaaccgtgtaaagataaactctataattcaagacctgaccattatgaa
aatacagataaaaaaccatatgacggtaataaaaactctgagcgctcacattttcctatt
tacgatccacgatctcgtcctcgtcaatatggagaattgaattcggaacacgcggaccat
atttatacttctccttctgattctcagtctcccttatattatggagattctcgtaaacga
actcgtacctcaagtaacaatagtgacatttctaatttttctaattcaaagaagttttac
gcaggagtttatcataattctagagacgattcttaa
DBGET
integrated database retrieval system
