KEGG   Hydra vulgaris (swiftwater hydra): 100207852
Entry
100207852         CDS       T01080                                 
Name
(RefSeq) pre-mRNA-splicing factor RBM22
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Pathway
hmg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100207852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hmg03041]
    100207852
Spliceosome [BR:hmg03041]
 Complex B
  Other components
   Prp19-related factors
    100207852
 Complex C
    100207852
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 Torus zf_CCCH_4 Nup35_RRM_2 zf-CCCH_2 RRM_3 zf-CCCH zf-CCCH_4 SpdB RRM_occluded zf-CCCH_10 zf-CCCH_PARP12 zf-CCCH_12 RRM_YTH1
Other DBs
NCBI-GeneID: 100207852
NCBI-ProteinID: XP_002162583
UniProt: T2M4L2
LinkDB
Position
15:complement(18456805..18472404)
AA seq 470 aa
MATSKGANLYNRQNWEQSDFPILCQTCLGDNPYVRMLKDKFGKECKICVRPFTIFKWCPG
AKMRYKKTEICQTCAKLKNVCQTCLLDLEYGLPIEVRDKALAIADTLPRSDVNKEFFHQT
LEKELANTDGTVAAGTLGKSQAASDLLMKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEMPNAPDDPLSNQNIKDRFYGVNDPVAAKMLKRAESMPKLESPSDKSITTLYVGGLD
ERIKEDDLRNFFYQYGEIRSVVVASNKSCGFICYTSRQAAEMAAERSFNKVIIKGKRLKV
LWGRSQEQRSGGKDEKGDRLKEYPPVPGLPDALPPIPTEDAPIMEPPNLFDESPSEQNAS
SIPLPAAYSNAPPMFSPHMSSSHPQGIPPPPPNMGGGFPPGPPPFMQRFPPPSGSYSNQV
QPSGIRFSISNGPSMRHGLHYPSQDPHRMGTEGSIENTSVQTPVIKLVQE
NT seq 1413 nt   +upstreamnt  +downstreamnt
atggcaacatctaaaggtgctaatctatacaacagacaaaattgggaacagtcagatttt
ccgattctctgccaaacatgtttaggagacaatccatatgtgagaatgcttaaagataaa
tttggtaaagaatgcaagatctgtgttcgaccatttaccatttttaaatggtgcccaggt
gctaaaatgcgatacaaaaagactgaaatatgtcaaacttgcgcaaaactaaagaatgtg
tgccaaacatgtctgttagatcttgaatatgggctgcccatagaagttcgtgataaagct
cttgctattgcagacacgttgccaagatcagatgtaaataaagaattttttcatcagacg
ttagagaaagagttagcaaatacagatggtacagttgctgctggaactttgggtaagtca
caggccgctagcgacttattaatgaagttggcgcgcacaacaccctattataaaagaaac
agaccccatatctgctcattttgggttaaaggtgaatgcaagcgaggagaggaatgtccc
tacaggcatgaaatgccgaatgctcctgatgacccattatctaatcaaaatattaaagat
cgattttatggtgttaatgatccagtggcagcaaaaatgttgaaacgtgccgagagcatg
ccaaagttagagtcgccatctgataaatctattacaacattgtatgttggtggtcttgat
gaaagaattaaagaagatgatttgagaaatttcttttatcaatatggcgagattcggtca
gttgtggtggcttctaacaaaagttgtggctttatttgttatacatcacgtcaagcagct
gagatggctgccgaacgatcttttaataaagtgattatcaaaggaaaacgtcttaaggta
ctttggggtcgttctcaagagcaaagaagtggtggaaaagatgaaaagggtgatagactt
aaggaatatccgcctgtcccgggactacctgacgcattaccgccaatacctacagaggat
gcccctattatggagcccccaaatctttttgatgagtcgccgtctgaacaaaacgcgtca
agtattcctctacctgctgcttattcaaatgctcctccgatgttttcgcctcacatgagt
tcttctcatcctcaagggattccgccaccgcctccaaatatgggtggtggttttcctccc
ggtcctcccccttttatgcaaaggtttccacctccttctggaagttactctaatcaagta
caaccatctggtattcgattttccatttctaacggaccttcaatgcgtcatggtttgcat
tatccatctcaagatcctcaccgaatgggcacggaaggatccatagaaaacacttcagta
caaacacctgtaattaaattagttcaagagtaa

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