Hydra vulgaris (swiftwater hydra): 100208020
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Entry
100208020 CDS
T01080
Symbol
LOC100208020
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hmg03036
]
100208020 (LOC100208020)
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100208020 (LOC100208020)
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
100208020 (LOC100208020)
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
100208020 (LOC100208020)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
Cnd1
SCD
HEAT_2
HEAT_GCN1_C
TPR_DNAAF5
Motif
Other DBs
NCBI-GeneID:
100208020
NCBI-ProteinID:
XP_047126267
LinkDB
All DBs
Position
12:complement(28837855..28971766)
Genome browser
AA seq
1355 aa
AA seq
DB search
MDDSLSKKRRKKNFKEVTQDLSNDELVRRLKSIAQELTSVEQGESLTELEALAASLATNF
IFYHKDKDVKSLSACCLADILRIFTPEPPYNEEQLKDIFRLFLQQFVELGNVKEGLMYQR
HFYILETLALGNTFAVCIELEAMDIIQKLFETFFSVISNHHNARVKCFMLDIMCPLILEG
DSLPQEIFDLILTSLVEPNKSKNLEAFKLASDVIDRCSSAIEPYIQLFFNNTLVLGSSPT
SLIAGKLYDLLYELYKINKNVLLYVLPQLNFKLQGSDESERLEAVKLLHRLFEYDGNTLS
ENNKTLWNSYLGRFVDVSLDIRVECVQMSKQFLLSPVERFVEDITEQLLQRILDPDEKVR
SETVVVICEAAAENFSLIKSQLIESVKGRTRDKKWLVRREAITSLGKLYKVVYNSKNVKC
QKDLAWIPSIILHLYIQDSIEDRLCIERVFHGCLIPVSLDSEIRMKRLLEVYLSLDETSI
NIFDSMLKHRSRVNFEFSALLELYKNEKEENKEQKLHLKILAVSRCLPDPIRAQENLKKL
LQLCADDKLYQLFKLCVDPRQECPKKMKSITEILKLTSKSTIIDTIKVLLDRVCSLIVDM
PSFTILLREVKLLIDGISNDDDAEESEDAIMEKGKFGLKLIKCLASTHPAVFQSKQCYEF
LLLLIKHNDSTVVEMTLDALNYVIAELEVVDKTLCSCYQPVLSKLVTNGTSKEAKFSLRC
LHTMLNDSSNVMERLFKNLLEKLNFDVDSSQLQAILSALGEVAILEPSVFEIKHKVVISN
FVVKQLLIVDREEPSNSQEDNEWHSNVSQETLTKIKGIKLLTCWLLGLTHSHSSQAIPVF
RLLTAILSNDGDLTGNKKISAADRSRLRLAAGLALLKIVQNLNYVDVITLQQYQQLSYIM
QDTCFEVREKFTIKLHQALDKIQLPLDYLAYFSLAATDPSKERRLKVHHMISKNAQTRRE
YSRMHSAAAARPYNVLPEYCLPYVVYLLAHHPDFNPTDFNELQKTKKYLWFFLEPIMGLK
AENYSFLKKLLENIKQTKDVQDPDNDIVNEKIYTVCDLAINCIMTKCHTFTLTDFPGNVV
LPKKLFVADKNLNNMKLYLPKNFEKSQKKHQVETVPKSMKMESTDEMTTETSTVISTKRS
AFDSGIENLKHSKKSRFISKENIKSPVELSRRTKNAKSIVQNLEKNKALSPSPLKKSPLK
VQKININTPDTPNSISSVSVDLSDTELPKTNIRKPQLKKKQSKLDSFIKKKEDFINDNIT
ATNKAEKEKTENTIVHQEKMTSFKNYHLRNSPLNASIANIRIGEKKGFETTNDITKEGDE
PSHLLINNEDSSHSAEKVSKNTNKLLIRRKQRTRK
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggatgattcattgagtaaaaaaagaagaaagaaaaactttaaagaagtcactcaagat
ttgtccaatgatgagttagttcggcgtctcaagtcaattgcacaagaacttacaagcgtg
gaacagggagaatctttaactgaacttgaagcgctagcagcttctcttgcaacaaacttc
atattttatcacaaggataaagatgtgaaatctttatctgcatgttgtcttgcagatatt
cttcgaatattcacacctgaacctccttacaatgaagagcaattaaaagatatttttcgt
ttatttctacaacagtttgttgagttaggaaatgtgaaagaaggactaatgtatcaacgt
catttttatattttagagacattggcattaggcaatacatttgcagtatgtatagagcta
gaagctatggatattatccagaaattatttgaaacctttttttctgtgatcagcaaccat
cacaatgctagagtaaaatgtttcatgttggatatcatgtgtccgttaatattagaagga
gactcacttccacaagaaatatttgatttaattttaaccagcttagttgaacctaataag
agtaaaaacttagaagcttttaaacttgcttctgatgtaattgacagatgctcttcagcc
atcgaaccttatattcaacttttttttaataacactttggtgcttggatcatcacctaca
tctttaatcgcgggaaagttatatgaccttttatatgagttgtacaaaatcaacaaaaat
gttttgttatatgttcttccacaattaaatttcaagcttcaaggatctgatgaatctgag
cggttagaagctgtaaaattattgcataggttatttgagtatgatggcaacactttgtct
gaaaacaataaaactttgtggaactcttatttaggaagattcgttgatgtttctcttgat
attcgtgtggagtgtgttcagatgtcaaaacagtttctgctttctcctgttgaaagattt
gtagaagatattacagaacagttacttcagagaatattagaccctgatgaaaaggttcgc
tcagaaacagttgttgtcatttgtgaagctgctgcagaaaatttttctttaataaaaagc
cagcttatagaatctgtgaaaggacgaactagagacaaaaagtggttagtacgtagagaa
gctataacatcacttggaaagctgtataaagttgtttataacagtaaaaatgttaaatgt
caaaaagatttagcttggataccttcgattattttacatctttatattcaagacagtatt
gaagatagattatgcattgagagagtttttcatggttgcttaatcccagtctcacttgac
tcagagattcgaatgaaaagactgcttgaagtctacctttcattagatgaaacatctatt
aacatatttgatagcatgttaaaacatagatccagagtaaattttgaattcagtgcactc
ttagaattatacaaaaatgaaaaggaagaaaataaagaacagaagcttcatttaaaaatt
cttgctgtgtcaagatgtttaccagatcctattcgtgcacaagagaatttaaagaaattg
ctacagctttgtgcagatgataaattataccaactgttcaaactatgtgttgatcctaga
caagaatgtcctaaaaaaatgaaatcaattactgagattcttaaactaacttctaaaagt
actatcatcgacactataaaagttttgcttgatcgtgtctgttctctaattgtcgatatg
cctagttttacaatacttctaagagaagtaaagttacttattgatggcattagcaacgat
gacgatgcagaagaatcagaggatgctattatggagaagggaaaatttggtctaaagcta
attaaatgcttggcaagcactcatcctgctgttttccaatcgaaacaatgttatgaattt
cttctgttactaatcaaacacaatgattcaacagttgttgaaatgacattagatgcgctg
aactatgttattgcagagttagaagttgttgacaagacactatgctcatgctatcaacca
gtgcttagtaaacttgtaactaatggcacttccaaggaggccaaattttcattacgttgt
ttacacactatgctaaatgattcatctaatgtaatggagaggttattcaagaatcttctt
gaaaagttaaattttgatgttgatagtagccaattacaagcaatactttctgcacttggt
gaagttgcgattttggaacctagtgtttttgaaattaaacataaagtggttatcagcaac
tttgttgtaaaacagcttcttattgttgatagggaggaaccaagcaactctcaagaagat
aatgaatggcattctaatgtttctcaagaaacacttaccaagatcaaaggaattaaacta
cttacttgttggttactgggactcacacatagtcatagcagccaagctattcctgtgttt
agactacttactgctatattgtctaatgatggagatttaacaggaaataaaaaaataagt
gctgccgatagatcacgtctacgcttagctgcaggacttgcccttttaaaaattgtacaa
aacttaaactatgttgatgtgatcacacttcagcaataccagcagctctcgtatataatg
caggatacatgttttgaagttagagaaaagtttacaataaagctacatcaagctctagat
aaaatacagttacctcttgattatttggcatatttttcattggctgcaacagatccatcc
aaggaaaggagacttaaggtccaccatatgatatcaaaaaatgcgcaaacaagacgtgaa
tatagtcgtatgcattctgcagcagcagctcgtccttataatgttttacctgaatactgt
cttccttatgttgtttatttattggcacaccatcctgattttaatcctactgatttcaat
gagctacaaaaaacaaaaaaatatctgtggttttttttggagccaataatggggttaaaa
gcagaaaactacagctttcttaaaaagttattagaaaatatcaaacaaacaaaagatgtt
caagatcctgataatgacattgttaatgagaaaatatatacagtctgtgatctggctatt
aactgtattatgacaaaatgccatacctttacacttactgacttccctggaaatgtggtt
ttacctaaaaagctttttgttgcagataaaaacctaaacaatatgaagttgtatttacca
aaaaattttgaaaaatctcaaaagaaacatcaagttgaaactgttccaaaaagtatgaaa
atggaaagtactgatgaaatgacaactgaaacttctacagtaatttctacaaagcgctca
gcatttgatagtggaattgaaaaccttaaacatagtaaaaagtctcgtttcatttcaaaa
gaaaatataaaatcaccagttgagctaagcagacgaacaaaaaatgctaaaagtatagtt
caaaatttagaaaagaacaaagcgttatcaccttctcctttgaagaagtctccattaaaa
gttcaaaaaataaatattaacacaccagatacacctaacagtatttcctctgtctctgtc
gatctctcagacacggaattaccaaaaaccaacattcgaaaacctcagcttaagaaaaaa
caatccaaattagactctttcattaaaaaaaaagaagattttataaatgataatataaca
gctactaacaaggcagaaaaagaaaaaacagaaaatactattgtacatcaggagaaaatg
acatcttttaaaaattatcacttaagaaattctcctctaaatgcatcaatagccaatatt
cgaataggcgagaaaaagggatttgaaacaacaaatgatataaccaaggaaggagatgag
ccgtctcatttgttaatcaataacgaagattcttctcattctgctgaaaaagtttctaaa
aacactaacaaactattgatcagaagaaaacaaagaactcgaaaataa
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