Hydra vulgaris (swiftwater hydra): 100208083
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Entry
100208083 CDS
T01080
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03030
DNA replication
hmg03410
Base excision repair
hmg03420
Nucleotide excision repair
hmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100208083
03410 Base excision repair
100208083
03420 Nucleotide excision repair
100208083
03430 Mismatch repair
100208083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmg03032
]
100208083
03036 Chromosome and associated proteins [BR:
hmg03036
]
100208083
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100208083
DNA replication proteins [BR:
hmg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100208083
DNA Replication Termination Factors
ELG1-RFC complex
100208083
Chromosome and associated proteins [BR:
hmg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100208083
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100208083
Check point factors
HRAD17(Rad24)-RFC complex
100208083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_22
AAA_11
AAA_14
RuvB_N
AAA_16
AAA_24
DEAD
ResIII
AAA_5
DUF815
AAA_assoc_2
AAA_30
AAA_7
AAA_3
AAA_19
bpMoxR
PhoH
TIP49
ATPase_2
AAA_28
AAA_2
Mg_chelatase
nSTAND3
RNA_helicase
AAA_18
Motif
Other DBs
NCBI-GeneID:
100208083
NCBI-ProteinID:
XP_047141890
LinkDB
All DBs
Position
10:10327831..10364053
Genome browser
AA seq
333 aa
AA seq
DB search
MPVAELQKDSNLPWVEKYRPACLDDLISHKDIIDTIQKFISEGKLPHLLFYGPPGTGKTS
TILAVAKQLYSPKEFHSMVLELNASDDRGIGIVREQILGFASTRTVFKSKFKLVILDEAD
AMTNDAQNALRRIMEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDADQVSLRLKH
VIQEENVTVTEDGMKSLIRLGKGDMRRSLNILQSTHIGYGKVDESTVYTCTGNPLPQDIQ
VMVDWMLNENFSTAFKKITEMKLVKGLALQDVLTEVHAFIHRIDFPPRVRMILLDKMAEV
EYRLAAGTSEKIQLSSLIACFQCIRDTVVDEIK
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtagcagagcttcaaaaagattcaaatcttccatgggttgaaaaatatagacca
gcttgccttgatgatctcatttcacacaaggacatcattgacacaattcaaaagttcata
tcagaaggaaaacttccacatttgctgttttatggtccaccgggaactggaaaaacatca
accattttagcagttgctaaacaactatattctcctaaggaatttcattcgatggtttta
gaattgaacgcttcagatgatagaggcattggtattgttagagagcaaattcttggattt
gcaagcacaagaactgtatttaagtctaaattcaaacttgtgatacttgatgaagctgat
gcaatgacaaacgatgcccaaaatgcacttcgaagaatcatggaaaaatacacagagaat
acacgtttttgtttgatctgcaactacttaactggtataatacctgctattcagtctcga
tgtaccagatttcgatttggaccattggatgctgatcaagtatcattaagattgaagcat
gttattcaagaggaaaacgttacagtcactgaagatggtatgaaatccttgatcagactt
ggaaaaggagatatgcgaagatcattaaatattttacagagcactcacattggctatggt
aaagtagatgagtctacagtttacacgtgcacaggaaatcctctaccacaagatatacaa
gtcatggttgattggatgttaaatgaaaattttagcactgcttttaaaaaaatcacagaa
atgaagcttgttaaagggttagcccttcaagatgttcttactgaagttcatgcttttatc
catcgaatcgattttcctccacgcgttcgaatgatactcttagacaagatggcagaagtt
gagtatcgtttagctgctggaacttcagaaaagattcagcttagtagtttaattgcgtgt
tttcagtgcatacgagacactgttgttgatgaaataaaataa
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