Hydra vulgaris (swiftwater hydra): 100208995
Help
Entry
100208995 CDS
T01080
Symbol
LOC100208995
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hmg03041
]
100208995 (LOC100208995)
03016 Transfer RNA biogenesis [BR:
hmg03016
]
100208995 (LOC100208995)
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100208995 (LOC100208995)
Spliceosome [BR:
hmg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100208995 (LOC100208995)
Transfer RNA biogenesis [BR:
hmg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
100208995 (LOC100208995)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
YsdB
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100208995
NCBI-ProteinID:
XP_047140566
LinkDB
All DBs
Position
13:4161896..4259677
Genome browser
AA seq
734 aa
AA seq
DB search
MNSTTLCCNSCLLEFGMLPELLKGVDEMGWGLATDIQAEAIPMILGGGDVLMAAETGSGK
TGAFCLPVIQIVYENILANSSEQPGNQKIKTEVAKGKWEMSKLDRSSSFAISEDGLLCQS
REHKEWQGSRSTLGVSKGSYYYEVKVTDEGLCRVGFSTENATLEVGCDSESFGFGGTGKK
STNKQFDTYGEPYGKNDIIGCFIDLDNGTIKYSKNGKDLGHAFDIPKKLYGSSFFASVTL
KNAELLFNFGDTPFKHATPHSTYLPLSKAKDVSLSKKLSVSKKYTNKSSPAALIIEPSRE
LASQTHDQISLFKKYLPDPKIKNVLLVGGENSSEQIKALQSGVDIVTGTPGKLDDFISSG
NLLLDQVRFLILDEADGLLNQNQGQLIEKLYNLCPKMSSDGKRLQVVLCSATLHNLEVKK
LADKIMHFPTWIDLKGQDSVPDTVHHVVCNVDPKSDTSWHFLKHKIQTDGIHLKDDTHPT
SKLPECLSEAVKVLKGEYVIKAISKLKMDQGIIFCRTKLDCDNLERYMKSKDVNEFSCVC
LHSDRTPNERTKNLWSFKNKKVKFLICTDVAARGLDIKGVPFVINVTLPDEKANYVHRIG
RVGRAERMGLALSLVSKYKEKVWYHKCDSRGANCNNTKLLKEGGCAIWYDEQNYLSEIEE
HLGETVSQISNDMVVPINEFDGKVVYGQKRQNKGSGFKYHLEELAPAVKDLAKLEKQVQL
SYLQYQIDWRQTIS
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtaccactttatgctgtaacagctgtctgttagagtttggaatgttacccgag
ttgttgaaaggtgttgatgaaatgggatgggggcttgcaacagatattcaggcagaagca
attccaatgatacttggtggtggtgatgtacttatggcagctgaaactggcagcggaaaa
acaggcgcattttgtcttccagtaatacaaatagtttatgaaaatatattagcaaattca
agtgagcaacctggtaaccaaaagataaaaactgaagtagctaaaggaaaatgggaaatg
agcaagttggacagaagcagctcatttgcaatatcagaagatgggttactctgtcaatca
cgagaacataaagagtggcaaggatctagatcaacacttggtgtatcaaaaggtagctat
tactatgaagtaaaggtgactgatgaagggttatgcagagtaggattttcaacagaaaat
gcaacgttggaagttggatgcgatagcgaaagttttggttttggtggtactggtaaaaaa
tccacaaataaacaatttgatacttatggagagccatatggtaaaaatgacattattggt
tgctttatcgatttggataatggaactataaagtacagtaaaaatggaaaagatttaggt
catgcttttgatattccaaaaaaactttatggctcatcattttttgcttcagttacatta
aagaatgctgagcttttattcaattttggagatactcccttcaaacatgctacccctcat
tccacctatcttccattatctaaagctaaagatgtttcattgtcaaaaaaattgtctgtt
tcaaaaaagtatacaaacaaatcttctcctgctgctcttatcattgagccatccagagaa
cttgcatctcagactcatgatcaaatttcacttttcaaaaagtatttgcctgatcccaag
attaaaaatgtactgttggttggtggagaaaattcaagtgaacaaataaaagcattgcag
agtggggttgacattgtaactggtacacctggaaagctagatgattttatatcatctgga
aatttgcttttagatcaggttcggtttttgatacttgatgaagcggatgggttattaaat
caaaaccaaggtcaattaattgaaaagttatacaatctatgtccaaaaatgtcttcagat
ggtaaaagattacaggttgtattatgtagcgcaactctgcataacttagaagttaagaag
ttggcggataagataatgcatttcccaacatggattgatctaaaaggacaagattcagta
ccagatacagttcaccatgttgtatgcaatgttgatccaaaaagtgatacgtcatggcat
tttttaaagcataaaattcaaacagatggcattcatttgaaagatgatacgcatccaaca
tctaaattacctgaatgtctttctgaagcagttaaagtactgaaaggagaatatgttata
aaagctatttccaaacttaaaatggaccaaggtatcatattttgtcgcacaaaacttgat
tgcgacaacttagagcgttacatgaagtcaaaagatgtaaatgagttctcatgtgtatgt
ttacatagtgacagaactccaaatgaaagaacaaaaaacctttggtcttttaaaaataaa
aaagttaaatttttaatttgcactgatgttgcagcacgaggtcttgacattaaaggtgtt
ccatttgttatcaatgttactttgccagatgagaaagctaactacgttcacaggattggc
agagtaggaagggcagaacgaatgggactggctttatcactagtatcaaaatataaggaa
aaggtttggtaccataaatgtgatagtcgtggagctaactgcaataacacaaaacttttg
aaggaaggtggatgtgctatttggtacgatgaacagaattatttgagtgaaattgaggag
cacttgggagaaactgtttctcaaatatccaacgacatggttgttccaattaatgaattt
gacggcaaggtagtatatggtcaaaaaaggcaaaacaaaggtagcggatttaagtatcat
ctagaggagcttgctccggctgttaaagatctcgctaagctagaaaagcaagtccagtta
tcttatcttcaatatcaaattgattggaggcaaaccatttcatga
DBGET
integrated database retrieval system
