Hydra vulgaris (swiftwater hydra): 100209270
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Entry
100209270 CDS
T01080
Name
(RefSeq) vam6/Vps39-like protein isoform X3
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg04140
Autophagy - animal
hmg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100209270
04148 Efferocytosis
100209270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hmg04131
]
100209270
Membrane trafficking [BR:
hmg04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100209270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
Clathrin
CNH
TPR_Vps41
Med15_C
Motif
Other DBs
NCBI-GeneID:
100209270
NCBI-ProteinID:
XP_012566900
UniProt:
A0A8B7E8J8
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Position
1:complement(40624817..40675552)
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AA seq
662 aa
AA seq
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MGITYHKAYVTKYINLKKSQHKTNGSIISRKEFIASLRGDQKELFDTGIKKSKPLIANVP
TGELALCRDDVTVFLHVDKESEYTDKFTVTWSDNPLALEFIHVYIIAALPKCVEICSFNS
RRVVQRIEAPNATTIVVGGVGVGSYCYIASLSHIWRLCLEDIRKQIDQLIKDEDYEMALK
LTELMDEGGDKKKIKIKQIKKLLGFSQFCQRQFEEAIKLFFSIDEDPVFVMGLFPDLLPE
MFRKRIKYPSTLPYLTDGDLEKGLKVLIGYLTEIRSNLTKNRQPLILSSQQSERSEMFPC
LIDTVLLKCYLQVNENLIAPLLRLSNHCHVEECERVLEKKKKFNELVLLYQSKNKHEKAL
DILLDQSKALDILLHQSDNDSSPLKGPSRTIEYLKKLDQSNLTLIFKYSVWVLKKYPNEA
LTIFTNDTQEIEQLPRDCVLEHLNRYAPNTVTKYLEHIIFDWKETKSEFHNRLFNCYKES
IISLIQSSDDQTPAGKEPEKLGDLRSRLHFFLEYSTQYDPSKLLQDFPQNILYEERIFLY
KREKRHEEALAVYIYILKDHETAEQYCHKIFSSDCVTESNRNVYLSLVKMYLKPEQVPAY
SAPDSVFSGVIMNPNLQAALDLLRKHATRIQIIEALKLLPSDTQIKDILEFLITALGDKL
QN
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgggaattacgtatcacaaagcatatgtcacaaagtatataaatctgaagaagtcacag
cacaagacaaatggatctatcatttccagaaaggagtttattgcttcattaagaggtgac
caaaaagaactttttgacactggaattaaaaagagcaagccgttaattgcaaacgtgcct
acaggtgagttagcattatgtagagatgatgtaacagtgtttcttcatgttgataaagaa
agtgaatatactgataaatttactgttacttggtctgacaacccacttgcgttagagttt
attcatgtttatataattgctgcactacctaagtgcgttgaaatttgttctttcaattca
agacgtgttgtacaaagaatagaagctcctaatgcaacaactattgttgttggtggtgtt
ggtgtaggttcttactgctatattgcatcactgtcacatatatggagactgtgtctagaa
gatattagaaagcaaattgaccagttgattaaagacgaagattatgaaatggcactaaaa
cttactgaactcatggatgaaggaggtgataagaagaaaattaaaataaagcaaattaaa
aagctgcttggtttttcacaattctgtcaaaggcagtttgaagaagctataaaactattt
ttcagcattgatgaagatcctgtatttgtaatgggattattcccagatttgttacctgaa
atgtttcgcaaacgtataaaatatccatcaactcttccatacctcactgatggagattta
gaaaaaggtttaaaagttctgattggttatttaactgaaataaggagtaatctgactaag
aaccgacagccattgatcttaagcagtcagcaatctgaaagaagcgaaatgtttccttgt
ttaattgacaccgttttacttaagtgctacctgcaagttaatgaaaatctaatagctcct
cttttacgtctcagtaatcactgtcacgttgaagaatgcgagcgcgtgctagagaaaaaa
aaaaagtttaacgagcttgtgcttctttatcagagcaaaaataaacatgagaaagctttg
gatattcttttggaccaatcaaaagctttggatattcttttgcaccaatcagataatgat
tcaagccctctgaaaggaccaagcagaacaatagaatatttaaaaaaactcgaccaatca
aacttaactcttatttttaaatattcggtttgggttttaaaaaagtatccaaacgaagct
ttaacaatattcactaacgatacacaagagattgaacaacttccacgtgattgtgtatta
gaacatttaaataggtatgcaccaaacactgttactaagtatttagaacatattattttt
gattggaaagaaacaaaatccgaatttcataatcgtctatttaattgctataaagagtca
attatttctttaatacaaagcagtgacgatcaaactccagctggaaaagaaccagaaaaa
cttggagatttacgttcaagacttcatttttttctggaatactctacgcagtatgaccca
tcaaagcttcttcaggattttccgcagaatattctttatgaggaacgtatttttttatat
aagagagaaaaaagacatgaagaagctctagctgtttacatatatattttaaaagatcat
gaaacggcggaacagtattgtcataagatattttcttcggattgcgttacagaatctaat
agaaatgtttatttaagcttagtaaaaatgtatttaaaaccagaacaggtacctgcttac
agtgcacctgactctgtatttagtggtgttattatgaacccgaatctacaagctgctctt
gatcttttacgcaagcatgcaacaagaatccaaatcattgaagcgcttaaacttttacct
tctgacactcaaatcaaagatattttggaattcttaataaccgcgttaggagataagtta
caaaactaa
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