Hydra vulgaris (swiftwater hydra): 100209507
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Entry
100209507 CDS
T01080
Symbol
LOC100209507
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100209507 (LOC100209507)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100209507 (LOC100209507)
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100209507 (LOC100209507)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
CNOT10_TPR
Motif
Other DBs
NCBI-GeneID:
100209507
NCBI-ProteinID:
XP_047145190
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All DBs
Position
04:complement(10607697..10745737)
Genome browser
AA seq
1267 aa
AA seq
DB search
MATLFSYFKKSPAPNKNNIVPTKKSKVEDKNSGTPLTTNNNNNNNTFLVGELVWAKLDTY
PFWPALVCKDPATNKHLKNYLEVHVQFFGEPPTHDWVKISNVKQFDELQPSNEEDLKIAF
KQAEAALKLTLPERIDSYYVCKASDSDEDTKKPKLNSRKRLRLISDSEDDLDKENVEDEE
SPYEPTQDVSSEEYDSVQSDDETENKKKRKRKSSNTQQKQIKKKLINVTPSVKKASTSIN
VTPSEKMNQSIDKAQTVLAKFASSGQSTPAASVTSAEVLDLEGKDYLHLTLPFLKDGQRM
DKNKKLHTDPDYDKRTLYVPDSYLQSKEMSPGMKQWWLLKKDLFDTVIFFKVGKFYELYH
MDAVIGVAELGLVFMKGKFAHCGFPEVAFGRYSEVLVQRGYKVARVEQTETPQAMNERSA
KVVRREVCAVISKGTRTFSFIEGHSEESSTAFLLAFTERPCDTSSPGCLGGSEFGVCFVD
TSTAKFYLGQFTDDRQCSRFLTMISQYPPAQVLYERGKLSNKMQHIFNHELSSAIKDSLV
TGSEFWDSTKTLKVFRDENYFNDDITNKDVNWPKLIKSMLADGDIIGTEVSKKYQLAISA
LGGCTWYLKKCCIDHELLSMHQFQEYVPMDQNVTTTKDSLPQYMVLDGITLTNLEITVNS
DGNTNGTLLQLLDQCVTVFGKRTFMQWICSPLCGKAAIDNRLDAVEDLMSIPSLISEART
VMKSIPDLERILRRVHSLGSLRRSKEHPDSRAIFYNDEIYSKKKIGDLLAALDGFKKAEQ
VIDLFQKQLTNFKSSLVKSLLYYDPVNNKNGQFPDLSPTLKFFQNAFDHKKAKDTGLIHP
KPGVVLEYDQALNDIESCEKKLDDYLKEQKKRLGCNSIVYWGKGNNRYQMEIPESALRSH
TPNDYHLKSQRKGFKRYQSAQIEKLVADLDAFEETRDASLKDTMRNIFNRFDKEYQTWEK
SVKCLSILDCLLSLATYSLNIEGLSCRPQVCSLLDENGNEVQPFFEFVNCRHPCMPNASD
LIPNDILLGKNEHSNNNKKASCCLLITGPNMGGKSTLMRQAGVLLIMAQMGSYVPAEVCR
FTPVDRVFTRLGARDRILHGESTFFVELSETSTIFRHATKHSLVLLDELGRGTATYDGTA
IASAVLHELSKGLGCRTLFSTHYHGIVDEFANIPNVKVGHMACMVECDNEDDDPTKENIT
FLYKLTSGACPKSYGFNAAKLAGIPLCIIKSGHVKAKQFEESARKIRILRSILSARPSEL
RRKLQSC
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggcaactttgttttcgtattttaaaaaatctccagctcctaataagaataacattgta
ccaacaaaaaaatctaaagtcgaagataaaaattcaggaacaccgttaaccactaataac
aacaacaacaacaacacatttttagtaggagaattagtttgggcaaaattagatacttat
cctttttggcctgcattagtgtgtaaagatccagcaactaacaaacatttaaaaaactat
ttggaagttcatgtgcaattttttggagaaccgcctactcatgactgggttaaaattagc
aatgtcaagcagtttgatgagctacaaccttccaatgaagaagatctaaagatagctttc
aagcaagctgaagctgcattaaagttaactcttccagagaggattgattcatattatgtt
tgtaaagcctcagattctgatgaggacactaagaaaccaaaattaaactctagaaaacgt
ttgaggttgatttcagactcagaagacgacttagataaagaaaatgttgaagatgaagaa
agtccctatgaaccaacacaggatgtttcttcagaagaatatgattctgtgcaaagtgat
gatgaaacagaaaataaaaaaaaaagaaaacgaaaatcgtctaatactcagcaaaaacaa
attaaaaagaagttaattaatgttacaccttcagttaaaaaggcaagcacatctataaat
gttacaccttcagaaaaaatgaaccaatcaattgataaagcacaaactgttctagctaaa
tttgcttcttcaggtcaatcaacaccagctgcatctgtaacatcagcagaggtgttagat
ttagaaggaaaagattatcttcatttaacacttccttttctgaaagatggtcaacgaatg
gacaaaaataaaaagttacacacagatcctgactatgacaagcgtacactatatgttcct
gattcttatcttcaatcaaaagaaatgtcacctggaatgaaacaatggtggttgttgaaa
aaagatctgtttgacactgttatttttttcaaggttggaaaattttatgagctttatcac
atggatgctgtgattggagttgctgaacttggtcttgtttttatgaagggcaaatttgct
cattgtggatttccagaagttgcatttggtcgctactctgaagttctcgtacagagagga
tataaggttgcaagagttgagcaaactgaaactcctcaggcaatgaatgagcgctctgct
aaagttgtcagaagagaggtttgcgctgtcataagcaaaggtacacgcacatttagcttt
attgaaggtcattcagaagaaagctctacagcatttttgttagcatttactgaaagacct
tgtgatactagtagtccaggttgcttaggtggcagtgaatttggtgtttgttttgttgac
acatccacagcaaagttttatctcggtcagtttacagatgatcgccaatgttcaagattt
cttaccatgatctctcagtatccgcctgctcaggttctttatgaaagaggaaaactttcg
aataaaatgcagcatatctttaatcatgagttatcatctgcaatcaaagattctcttgtt
acaggatcagagttttgggatagtacaaaaactttaaaagtatttcgagatgaaaattac
tttaatgatgacattacaaacaaagacgtgaattggccaaaacttataaaatctatgctg
gcagatggtgatataattggaacagaagtttctaaaaagtatcaactggctataagtgct
ttgggaggttgcacctggtatttgaaaaaatgctgcattgatcatgagttactttcaatg
catcaatttcaggagtatgtcccaatggatcaaaatgtaacaacaacaaaagacagttta
ccccaatatatggttcttgatggcattacattgacaaaccttgaaattacagttaactct
gatggcaacactaatggaaccttgttgcagttgttagaccaatgtgtaactgtgtttgga
aagcgtacttttatgcaatggatttgttcacctttgtgtggaaaagcagcaatagataac
cgactagatgctgttgaagatctcatgagtattccctcactaataagtgaagcacgaaca
gttatgaaatcaattcctgatcttgaaagaatactaagaagagtacattctctaggatcc
ttaaggcgaagtaaggaacatccagacagcagagctattttttacaatgatgagatttac
agcaaaaagaagataggtgacctattggctgctttggatggttttaaaaaagcagaacaa
gtgattgatttgtttcaaaagcaactaactaattttaaatcaagccttgttaaaagtctg
ctatattatgatccagttaacaacaaaaatggtcagtttcctgatttatctcctactttg
aaattttttcagaatgcttttgatcataagaaggcaaaagatacaggtctcattcatccc
aaaccaggagttgttttggaatatgaccaagctttaaatgatattgaatcatgtgaaaaa
aaacttgatgattatcttaaagaacaaaaaaaaaggctagggtgcaatagtatcgtgtat
tggggaaaaggaaataatcgctaccagatggaaatacctgaatcggcgctgcgttctcat
actcctaacgactatcatttaaaatcccaaagaaaaggtttcaaaagataccagtctgct
caaattgaaaaattggttgcagatttagacgcttttgaagaaacacgagatgcttcactt
aaagatactatgagaaatatttttaatcgctttgacaaagaatatcaaacatgggaaaaa
tcagtgaaatgcttgtccatacttgattgtcttctttcattggcaacatattccttaaat
atcgaaggtctttcgtgtcgtcctcaagtatgtagtttgctagacgagaatgggaacgaa
gttcagcctttttttgagtttgtcaattgtcgtcatccttgcatgccgaacgccagtgat
ctgattccaaatgatatattacttggaaaaaatgagcattctaataataacaaaaaagct
tcttgttgtttattgattactggaccgaacatgggaggaaaatcaacgcttatgcgacaa
gctggagttttactcatcatggcccaaatgggtagttatgttccggctgaagtttgtcgc
tttacgcctgttgaccgtgtctttacaaggcttggagcacgtgatagaatcttacacggt
gaaagcacattttttgttgagttgagtgaaacctctactatatttcgacatgccacaaaa
cattcgcttgtgttgctagacgaacttggtagaggaacagcaacctatgatggtactgct
attgcttcagccgtcttacatgaactttcaaaagggttaggttgtcgcactcttttttca
acacactatcatgggattgtagacgaatttgcaaatattccgaatgtgaaagttggtcat
atggcatgtatggtggaatgcgataatgaagatgatgatcctaccaaagaaaatataact
ttcctatataaacttactagcggtgcttgtcctaaaagctacggttttaacgcagctaaa
ttggcgggaataccgttgtgtataataaaatctggtcatgttaaagcaaaacagtttgag
gaatcagctagaaagattcgcattttgaggtcgatactaagtgcaagaccaagcgagtta
aggaggaagcttcaatcgtgttaa
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