Hydra vulgaris (swiftwater hydra): 100211742
Help
Entry
100211742 CDS
T01080
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03013
Nucleocytoplasmic transport
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100211742
03015 mRNA surveillance pathway
100211742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100211742
03041 Spliceosome [BR:
hmg03041
]
100211742
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100211742
Spliceosome [BR:
hmg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
100211742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Lipase_GDSL_2
Lipase_GDSL
Motif
Other DBs
NCBI-GeneID:
100211742
NCBI-ProteinID:
XP_012556964
UniProt:
A0A8B7DFP4
LinkDB
All DBs
Position
3:complement(59532928..59585142)
Genome browser
AA seq
1071 aa
AA seq
DB search
MADAGFFRGTTSEQDSRFADKEKKLMKKMKFDPLLTSKVDMEKVNLDTIKPWVQSRITSL
LGGIEDEVLIGYIYELLESQRYPDPKSLQISVTGFLNGKNARIFMGELWAHLVSAQTSIA
GIPEQFLEKKKEEILIRKQETERITANLQKTQAVEADSTEPESKPPKQKSKQPVYKEALT
IGVVPPSEYGTPAMKDQREIRKSLTGYMSSPACTPVCRDKAGWYGEHEKHVEIAKTSSAC
VLLIGDSIIQGLARYPKIWNKYFSPLKSLNFGLGGDRTQHVLWRVENGEIPLNAQTIVIH
VGTNNTDRDSPKDIANGIGSIAMMFQEAKPNAKIILAGLLPRDLQPSFKREQTAKVNKYL
KKLCKSGHIRNFYYLKPDADWVLSDGTLNTKYYFHDHLHLVEEGDEKFGKAIFDIITKIY
GGVKIEMSSDSELSDDYTSGKNFKITKQVGHPRSVSPGYRRRSISRSPRRYSRSPKNSRT
RSRSRSPRRRSRSPRRRFSHHSSYGRNRRRSRSRSYSRSPIRRNKGRQSSRSPDVRHSTS
VNINTKDQVKSVSPKTSSDEELVKIQPADEGLMKEVDEILLKSETSPIQYQKSGKTQNRT
YRRQQSESDVDNADTRPVKPEIKTSSRSPISKKRSRYLSPQKEKFIRRDSPRRFRARRSI
SPQQKSPLRSKRSKTFSQSPPKKFRRQRSPISSNRHSLSRSQSPVQKAAVQSNRSSVVLS
RKQRNHSSSEESLSEDHLYAAHIKEKEMAERLRKKHSERKRQQRSLSASSEKEDSHDLRR
KKMLEAAAKRMAEKSDSDNESKESNIKNLKRVEVKKKSVSESSSEEKVTSSRVRKSNGSD
VEFESKGKLFRNQKTKEKTKSRSSSKENLERNESSSSDQESRLEQIKNKIKHRKELSTEH
LKVRERSSNEVNKRQLNITREIEADSDNTNNSNSESSEDSEDEVDQRKVILRQKSSSSSS
SPKLVGKKNEKVESEPEVNYEIERNFQRSINKDESDEEDSEEESASEHERHRHKARKSRR
KTQSSRRKSKKKKRKSSTDEDSSEEISDVEKKLRDRALKSMQRVKRRSESD
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgcgggattctttaggggtaccacttctgagcaagactctcgctttgcagat
aaagaaaaaaagttgatgaagaaaatgaagtttgatccactattgacatcaaaggttgac
atggaaaaagttaatttggatactattaaaccatgggtacaatcaagaattacaagtttg
cttggtggtatagaggatgaagtgcttattggttatatatatgaattattggaatctcaa
cgatatccagatcctaaatctctccagatatctgtaactgggttcttgaatggtaaaaat
gcacgtatatttatgggagagttatgggcacatcttgtaagtgctcaaacaagtatagct
ggcatcccagaacagtttttagagaaaaaaaaagaggagattcttattcgcaagcaagaa
acagaacgtattactgctaatttgcaaaaaactcaagcagtagaagcagatagtactgaa
ccagaatctaaaccaccaaaacaaaagagtaagcaacctgtttataaagaggctttaaca
attggtgttgtacctccttcagagtacggaacaccagctatgaaagatcagcgagaaatt
cgcaaatcattaactggttacatgtcttctcccgcctgtaccccagtatgtagggataaa
gctggttggtatggggagcatgaaaaacatgttgaaattgctaaaacatcaagtgcatgc
gtcctacttattggagattcgattattcaggggcttgcgcggtatccaaaaatatggaac
aagtacttttcaccattaaaatctttaaactttggcttaggtggcgatagaacacagcat
gtattatggcgagttgaaaatggggaaatccctttaaatgctcagacaattgttattcat
gttggtactaataacactgatagagatagtcctaaagatattgctaatggcattggatct
attgctatgatgtttcaagaagcaaagcctaatgctaaaattattttagcaggacttttg
ccacgagatttgcaaccatcttttaaaagagagcaaacagcaaaagtaaacaaatatcta
aaaaaactttgtaaaagtggtcatataagaaatttttattatttaaagcctgatgctgat
tgggttctatctgatggtactttaaacacaaagtactatttccatgaccatttacattta
gttgaagagggtgatgagaagtttggtaaagctatttttgatataataacaaaaatttat
ggaggagttaaaattgaaatgtcctctgattctgaactcagtgatgactatactagtggt
aaaaatttcaaaatcactaaacaggttggtcatccacgaagtgtttctccaggatatcga
aggcgttcaatttcaagatctccgagaaggtactctagatcaccaaagaattcacgaaca
agatcacgatctcgttctccaaggcgtcgatctcgttcccctagaagaaggttttctcat
cacagttcttatgggcgtaatagacgtcgatctcgttctcgttcttattccagatcacca
atcagaagaaataaaggaagacaatcaagtcgttcacctgatgttcgccattcaacatca
gtaaacattaatactaaagatcaagtaaaaagtgtgtcccctaagacctcatcagatgaa
gaacttgttaagatccagcctgctgatgaaggattgatgaaagaagttgatgagatcctt
ttaaagagtgaaacatctcctatccagtatcaaaagtcaggtaaaacacaaaatcgaaca
tacaggcgtcaacaatctgaatctgatgttgataatgctgacactagaccagttaaacct
gaaataaagacaagctcaagatctcctataagcaagaagcgttctcgttatttatctcct
caaaaagaaaaatttatcagaagagattctccaaggcgatttagagcaagacgttcaatt
tctcctcaacaaaaatcgcctttgcgttctaaaagatcaaaaacattttctcaatctccc
cccaaaaaatttcgtcgtcaaagatcccctatttcttctaaccgtcacagtctcagtcga
tctcaatccccagtccaaaaagcagccgttcaaagtaatagatcatcagtagtactctct
agaaaacaaagaaatcatagtagttctgaagaatctttatctgaagatcatctttatgcg
gcccatattaaagaaaaggaaatggctgaacgattacgtaaaaaacatagtgaacgaaag
cgccaacaacgtagtctttctgcatctagtgagaaagaagattctcatgatttgcgtcgc
aaaaaaatgcttgaagcagctgcaaaacgaatggcagaaaaatcagattcagataatgaa
tctaaggagtcaaatataaaaaatttaaaaagagtagaagttaaaaaaaaatctgttagc
gaatcttcaagtgaagaaaaagttacttcaagtagagttcgtaaatccaatggttctgat
gttgaatttgaaagtaaaggaaaattgtttagaaatcaaaaaactaaagaaaaaactaaa
tctcgttcatcttcaaaagaaaatctagagagaaatgaaagctcgtctagtgatcaggaa
tcaagacttgaacagataaaaaataaaataaagcatagaaaagagctatcgacagaacat
ttaaaagttagagaaagatcttctaatgaagttaataaaagacaattaaatattactcgt
gaaatagaggctgattcagataatacaaataattccaacagtgaaagttcagaagattct
gaagatgaagttgatcaacgcaaggtcattcttcgacaaaagagctcatcttcttcaagc
tctccaaaattagtggggaaaaaaaatgaaaaagttgaaagtgagccagaagttaattat
gaaattgaaagaaactttcaaaggagcatcaataaagatgaatctgatgaagaagatagt
gaagaagagagcgcctcagaacatgaacgtcatcgtcataaagctcgaaagagtaggagg
aaaactcaaagtagtcgacgtaaatccaaaaagaagaagcgaaagtcttcaactgatgag
gattcgtcggaagaaatttctgatgttgagaaaaagcttcgtgacagagcacttaaatca
atgcaacgagtaaaacgtcgctctgagtccgattga
DBGET
integrated database retrieval system
