Hydra vulgaris (swiftwater hydra): 100211987
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Entry
100211987 CDS
T01080
Name
(RefSeq) collagen alpha-1(I) chain-like precursor
KO
K19719
collagen type II alpha
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100211987
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hmg00536
]
100211987
Glycosaminoglycan binding proteins [BR:
hmg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100211987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
WAP
Motif
Other DBs
NCBI-GeneID:
100211987
NCBI-ProteinID:
NP_001296598
UniProt:
A1XVT1
LinkDB
All DBs
Position
7:41148258..41172431
Genome browser
AA seq
1476 aa
AA seq
DB search
MAFSSSLFMLMSIHFIALTYGQGTSTRPGECLPVPEDDTRECSPEDENSCITDSDCPNSN
EKCCSDGCNLLCTRNFSPPVAPITLKGNPGDPGDKGDPGVKGAKGTTGPRGVKGDKGLAG
PPGDNGKRGKRGKPGPPGPAFGGGPGGGEIPVGPLTGEKGPGPNGEGLAGSLETEGSVVA
KEGPKGPMGPDGKQGPRGQYGDRGEPGPQGEPGDPGEKGAQGPAGSPGTNGRDGLNGERG
DPGTIGPPGEPGPEGLQGPSGLDGPQGYKGNKGEQGEQGPSGEKGSSGKEGEKGQEGENG
LKGDTGPAGPRGLQGPPGPQGQMGPTGLMGPIGSIGLPGPQGSAGLPGTPGDQGERGPKG
ETGATGSRGERGEQGERGKAGEPGQKGSKGPLGSRGRDGFRGDKGSSGSPGSQGPRGLVG
PRGHQGLQGSDGSIGEPGPRGALGEQGPQGLQGPKGMTGDPGSPGSSGAPGPTGSVGKPG
RDGNIGPAGPDGPPGISGIPGNPGEPGAPGEKGQRGDRGQIGQQGIKGSTGAPGASGEMG
ASGDRGSPGPAGKPGTSGKQGARGIPGNDGRPGAMGPMGERGLPGIPGLQGMKGSPGLSG
ATGENGRPGDKGTQGDKGLKGNQGQIGESGPIGLKGERGLAGPTGQPGHQGPPGALGESG
APGKDGDPGQPGDQGNDGRQGEQGLRGPPGVKGAPGPRGAPGLVGEPGEQGSDGIPGYKG
PSGPPGLPGDNGQPGSSGLPGSKGPEGEKGQHGARGAKGQTGDEGKDGAKGPDGPAGLQG
PPGESGIKGEPGRSGSNGLPGRRGNPGPQGNKGPAGQPGEPGPVGHPGSDGAKGELGARG
EKGETGPAGGNGEAGQIGALGAEGGRGEKGDRGQPGPRGNQGSPGNDGPRGRRGPNGNPG
PSGRPGPQGKDGPKGSPGETGHPGKPGENGAPGFPGKDGRNGEPGEDGISGLPGDIGPVG
LPGQPGPQGRIGASGFPGTQGTVGTKGEPGVPGKPGFKGQKGSIGANGSPGPVGLPGKSG
KDGAPGTDGKNGEPGDIGPKGNSGEKGFLGLPGVVGAPGLAGPTGAKGRAGGPGTRGIDG
LKGADGPKGPKGNIGSRGAKGSKGNKGQNGEKGDKGFRGLTGPDGIQGLMGKQGEMGLDG
NKGSIGHPGNQGPRGRPGQDGIPGEMGDTGVDGVKGAPGLRGQPGDDGHPGSPGPTGPPG
PPGGVNNFAAGGLTSFPPMGNTEKGPGYQGYRYYRSERGESFVEATEKNKDTVIEKLIRL
EDVTQGAQKPDGSEYFPAKSCKDLKMCHPNVISGEYYIDPSLGANVDKIKVTCEFYPTAS
ETCIKPTVSMFEKKKWVSQSTDQWKWFNGEISSDSIFTYASQVQLRFLRLNSQFVRQNLT
YHCLNSHAHNDSFGNNRPYVKIMSSDDIEIHTGSHMKNRLKVLQDQCNKKDNQWHKTVFE
FSSKITSRLPIVDVAVFDVANVGEQFGIELGPVCFY
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcaagcagtctgttcatgttaatgagcatacattttatagcgctcacttat
ggtcaaggtacttcgaccaggccgggagaatgtttacctgtacctgaagatgacacccgc
gagtgttcacctgaagatgaaaatagctgcataaccgattcggattgccctaattcaaat
gaaaaatgttgcagcgatggttgtaaccttttatgtactcgaaatttcagtccacctgtt
gctcctataacattgaaaggaaatccaggtgatccaggagacaaaggagacccaggagta
aaaggtgctaaaggtaccactgggcctcgtggggtgaaaggagataagggtttagcagga
ccacctggtgataatggaaaaagaggaaagcgtggtaaacctggtccacctggtcctgca
tttggaggaggaccaggtggaggtgaaatacctgtaggaccactaactggagaaaagggt
ccaggacctaatggagaagggctagctggaagcttagaaactgaaggatcagttgttgct
aaagaaggtccaaaaggtccaatggggcctgatggtaaacaaggtcctagaggacagtat
ggtgatcgtggtgaaccaggtcctcaaggtgaacctggcgatcctggtgaaaagggcgct
caagggccagctggatctccaggtacaaatggtcgtgatggcttaaatggtgaacgtgga
gaccctggaacaataggaccaccaggcgaaccaggtccagaaggattgcaaggacccagt
ggattggatggtccacaaggttataaaggaaacaaaggtgaacaaggagaacaaggacca
agtggtgaaaaaggttcttctggaaaagaaggtgaaaaaggtcaggaaggtgaaaatgga
ttgaaaggagatactggaccagcaggtcctcgtgggttacaaggacctccgggaccccaa
ggacaaatgggtcctacaggattaatggggcctattggatcaataggacttccagggcca
cagggatcggctggtttgcctggtacaccaggagatcaaggagaaagaggacctaaagga
gaaacaggagcaactggttccagaggggagcgcggtgaacaaggagaaagaggaaaggct
ggagaacctggtcaaaaaggttcaaaagggccattaggttcaagaggcagagatgggttt
cgtggagataaaggaagttctggctcacctggttcccaaggtccaagaggtctagtaggg
cctcgtggtcatcagggtttgcaaggatctgatggtagtataggtgaacctggtccacgt
ggtgctcttggtgaacaaggtcctcagggtttacaaggtccaaagggtatgactggtgat
ccaggaagtcctggaagttctggtgcaccaggaccaactggttctgtaggaaaaccaggt
cgagatggaaatattggcccagctggtcctgatggacctcctggtatatctggtatacca
ggaaatccaggagaaccaggagcacctggagagaaaggtcagagaggagatcgtggtcaa
attggtcagcaaggtataaaaggttcaacgggtgctcctggtgcttctggtgagatgggt
gcttctggtgatagaggtagtccaggtccagcaggaaaacctggaacatctgggaagcaa
ggagctcggggaatccctggaaatgatgggcgaccaggagcaatgggaccaatgggtgaa
agaggattaccaggtatcccaggtcttcaaggaatgaagggttcacctggattatcagga
gctactggtgaaaatggtcgaccaggagataagggaacacagggagataaaggattaaaa
ggtaaccaaggacaaattggtgaatctggacccattggtttaaaaggagagcgtgggcta
gctgggcccactggtcaaccaggacatcaaggacctccaggagctctcggagaatctggt
gcacctggaaaagatggtgatccaggtcaaccaggcgatcaaggaaatgatgggcgtcaa
ggagagcaaggtttgcgaggaccacctggtgtcaaaggagctcctgggccaagaggcgct
cctggattagttggagaacctggtgaacaaggttctgatggtatacctggttataaagga
ccttcaggtcctcctggattgcctggagataatggtcaaccaggatcttctggtctacca
ggttcaaagggacccgaaggagaaaaaggccaacatggtgcacgaggagctaaaggtcaa
actggagatgaaggtaaagatggagctaaaggtcctgatggacctgctggtttacaagga
ccacctggtgaatctggtataaaaggagaacctggtcgatctggatctaatggattacct
ggaaggcgaggaaaccctggaccacaaggtaataaaggaccagctgggcaacctggtgaa
ccaggtcctgttggtcatcctggatctgatggtgcaaaaggtgaactaggagctcgtgga
gaaaaaggtgaaactggtccagctggtggaaatggtgaagcaggacaaattggtgcttta
ggtgctgaaggaggaagaggagaaaaaggagatcgtggtcaaccaggtcctcgtggaaac
caaggttctcctggaaatgatggacctagaggtaggcgtggtccaaatggaaatccagga
ccttcaggtcgtcctggtcctcagggaaaagatggaccaaaaggatctccaggtgaaact
ggtcatccaggtaaaccaggtgaaaatggggctcctggatttccaggtaaagatggtcga
aatggtgaacctggagaagatggtatttctggtttacctggagatataggaccagttggt
cttcctggccaacctggtccacaaggaagaattggggcttctggttttccaggaactcaa
ggaacagttggaacaaaaggagagcctggtgtacctggtaaacctggtttcaaaggacaa
aaaggatctataggagcaaatgggtctccaggaccagttggattacctggaaaatctgga
aaagatggtgcgcctggtacagatggtaaaaatggagagccaggagacattggaccaaaa
ggaaactctggtgaaaaaggatttttaggtttacctggtgttgttggagctccaggttta
gcaggacctacaggagctaaaggaagagctggtggtcctggtactcgtggaattgatgga
ttaaaaggagctgatggaccaaaaggtccaaaaggaaatattggttctcgtggagcaaag
ggttctaaaggtaacaaagggcaaaatggtgaaaaaggagataaaggatttcgtgggttg
acaggacctgatggtatacaaggtctaatgggtaaacaaggtgaaatgggtcttgatggt
aataaaggaagcattggacatccgggaaatcaaggaccaagaggtcggcctggacaagat
ggaatacctggagaaatgggagatactggtgtagatggagtgaagggggctcctggattg
agaggacaacctggagatgatggtcatccaggatcacccggacctacaggtccaccaggt
ccacctggcggggtaaacaattttgcagcaggtggtctgacttcatttccaccaatgggt
aatacagaaaaagggcctggttaccagggttacagatactatcgtagcgaacgaggtgag
agttttgttgaagctactgaaaaaaacaaagatacagtaattgaaaagcttattaggcta
gaagatgttacacaaggagcacagaagccagatggaagtgaatattttcctgctaaatca
tgtaaagatctgaaaatgtgccatcccaatgtaataagtggggagtattatattgatcca
agtttgggtgcaaatgtggataaaataaaagtcacatgcgaattttacccaacagcttct
gaaacctgtatcaaaccgacagtatcaatgtttgaaaagaaaaaatgggtctctcagagc
actgatcaatggaaatggttcaatggagaaatctcttcagattccatattcacttatgca
agtcaagttcagcttcgcttcttacgtttaaacagtcaatttgtaagacagaatttaact
tatcactgtttaaattctcatgctcataacgattcctttggtaacaatcgaccatatgtc
aagataatgtcaagcgacgacatagaaattcacacgggtagccatatgaaaaacaggtta
aaggttcttcaagatcagtgtaacaaaaaagacaatcaatggcataaaactgtttttgag
tttagcagcaaaataacttcgcgtttaccaattgtagatgttgcagtatttgacgtcgct
aacgttggagaacaatttggcattgaattaggtccagtatgtttctattaa
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