Hydra vulgaris (swiftwater hydra): 100212013
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Entry
100212013 CDS
T01080
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100212013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hmg03041
]
100212013
03009 Ribosome biogenesis [BR:
hmg03009
]
100212013
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100212013
Spliceosome [BR:
hmg03041
]
Complex A
U2 snRNP components
U2 related factors
100212013
Complex B
100212013
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100212013
Ribosome biogenesis [BR:
hmg03009
]
Eukaryotic type
90S particles
Helicases
100212013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
Flavi_DEAD
ABC_tran
Microtub_bd
AAA_29
T2SSE
TsaE
Motif
Other DBs
NCBI-GeneID:
100212013
NCBI-ProteinID:
XP_047124124
LinkDB
All DBs
Position
15:28912967..28943262
Genome browser
AA seq
724 aa
AA seq
DB search
MSDRKRRLDVDGSSSKRSREEEMRKQVLSNSLQLPPQMAITSLKETCPKINPFTQKPFSE
RFYAILKRRLQLPVWEYRDEFLKITKENQCIVLVGETGSGKTTQIPQWCLDLVSMGRRKH
VCCTQPRRVAAMSVAQRVADEMDVTLGQEVGYSIRFEDCSSARTVMKYMTDGMLLREAMT
DPLLDRYGVILLDEAHERTLATDILMGLIKEVIKQRPDLKVIIMSATLDAGKFQDYFDNA
PLLTIPGRTFPVEIFYTPEPERDYLEAAIRTVVQIHLCEEQDGDVLLFLTGQEEIDEACK
RIKKEIDNLGPEVGEMKIIPLYSTLPPQLQQRIFESAPPTKPNGGIGRKVVVSTNIAETS
LTIDGVVFVIDPGFSKQKVYNPRIRVESLLVSAISKASAQQRAGRAGRTRPGKCFRLYTE
KAYKSEMQSNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLQ
ALDDDGDLTELGSMMAEFPLDPQLAKMVIASTDHNCSNEALSIVAMLSVQQIFMRPNDAK
KAADEAKMKFAHIDGDHLTLLNVYHAFKQNHEEAQWCYDNFLNVRSLKSADNVRQQLARI
MDRFSLKRTSTDFNSRDYYVNIRKALVTGFFMQIAHLEKTGHYLTVKDNQVVQLHPSTCL
DHKPEWVLYNEFVLTTKNYIRTCTDVKAEWLIQLARQYYDLRNFPNCEAKKVLERVVERM
GKDK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcgtaaaagaagactagatgttgacggatcttcgtcaaaacgcagcagagaa
gaggaaatgcgaaaacaggtcttatcgaacagtctccaacttcctcctcaaatggcaatt
acaagtcttaaagaaacatgcccaaaaataaatccgtttacacaaaaaccatttagcgaa
cgtttttatgctatacttaaacgcagactacagcttccagtatgggaatatagggatgaa
tttttaaagattacaaaagaaaatcagtgtattgtcttggttggtgaaactggcagtgga
aaaacaactcagattcctcagtggtgccttgatcttgtttcaatgggtcgacgtaaacat
gtttgttgcacacagccacgcagagttgcagcaatgagtgttgctcagagagtagctgat
gagatggatgttactcttggacaagaagttggctattcaattcgatttgaagattgctca
agtgctaggacagtaatgaaatatatgactgatggtatgttgcttcgagaagctatgact
gaccctctattagacagatatggtgtaatattactcgacgaagcacatgaaaggacatta
gctactgatattttgatgggcttaatcaaagaggttataaaacaaagaccagatttaaag
gtgattattatgtctgcaaccctggatgctggaaaatttcaagattattttgataatgct
cctttgctgaccattccaggtcgaacatttcctgtcgaaatcttctatacacctgaacca
gagcgagattatcttgaggcagctataagaactgttgtacagatccatctttgtgaagaa
caagatggggatgttttactttttcttactggacaagaagaaattgatgaagcgtgtaaa
cgcatcaaaaaggaaattgataatcttggaccagaagttggagaaatgaaaattatacct
ttatattccactctacctccacaacttcaacagcgtatatttgaaagtgctcctcctaca
aagcctaatggtggaattggtcgtaaagtggtggtttcaacaaatattgctgaaacatca
ttgacaatcgatggtgtagtttttgtaatagatcctggattttcaaaacaaaaagtgtat
aatcctcgtattcgtgtggagtctcttcttgtatccgctatttctaaggctagtgctcaa
caacgagctggacgtgcagggagaacaagacctggaaaatgtttcagattatacactgag
aaggcatataaatctgaaatgcaaagtaatacatatcctgagattttgcgatcgaatctg
ggtactgttgtgttgcaacttaaaaaattaggaatagatgatttagtgcattttgacttc
atggatcctcctgcaccagaaacacttatgagagcacttgagttattaaattatttgcaa
gcccttgatgatgatggtgatcttacagaattaggttctatgatggctgagtttccgtta
gatccacagctagcaaagatggttattgcaagtactgatcataattgttcaaatgaagct
ctttcaattgtggccatgttatcagtccaacagatttttatgcgtccaaatgatgcaaag
aaagctgcagatgaagccaaaatgaagtttgctcatatcgatggtgatcatctaacatta
ctcaatgtttaccatgcttttaaacaaaatcacgaagaagcccaatggtgttatgataat
tttttgaatgttcggtctcttaaatctgcagataatgttcgtcaacagttggcgcgaatc
atggatagatttagtttaaaacgaactagtacagacttcaacagtagggattactatgtt
aacataagaaaagctcttgtaactggattttttatgcagattgctcatttggaaaagact
ggtcattatttgacagtgaaagacaaccaggtagttcaactgcatccttctacttgtctt
gatcacaaacctgaatgggttctttataatgagtttgtgctcacaacaaaaaactatatt
cgcacatgtacagatgtcaaagcagaatggttgattcagttggcacgtcagtattatgat
cttcgaaatttcccgaactgtgaagcaaaaaaggtcttagagcgtgttgttgaaagaatg
ggaaaagataaataa
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