Hydra vulgaris (swiftwater hydra): 100212086
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Entry
100212086 CDS
T01080
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hmg03041
]
100212086
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100212086
Spliceosome [BR:
hmg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100212086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
zf-CCHC
CMS1
ResIII
MOEP19
KH_KhpA-B
KH_NusA_C
Cas3-like_C_2
KH_2
zf-CCHC_2
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
100212086
NCBI-ProteinID:
XP_002163544
UniProt:
T2M3S8
LinkDB
All DBs
Position
2:complement(56339991..56387826)
Genome browser
AA seq
745 aa
AA seq
DB search
MGDEDWDEEISTGVVPIREIKSFTLEESFSKHQSDHKNQPAFQNGSSSYHGRSSGKMQRG
RGNYVENSFRSHEHSGNVNSTPSRQLSDFNNQKPSNGFASQGHQDNILVIDVSNELVGKV
IGKGGIKIRELQDVSGARIRINQNSASLSKTPIEISGTLAQREKAKKLIEDLTIQPGDLQ
AWADKCNREFAESRLTAPPVGINWGELKLQAEEYEIKKWADCPDIIKKFYKEQNHIAKMT
EEKVLEIRELKNKITVSDLSKTSRKIPNPVLTFDDAFYDYPEILSTIKSNNFTEPSPIQC
QAWPVLLSGMDCIGIAQTGTGKTLAFLLPAFIHIDGQPIPRDKRGGPSCLVLSPTRELAQ
QIEMEVKKFHYRGIRSVCIYGGGDRSAQINLVRQGVEIIIGTPGRLNDLLMNGFFSVKSV
TYLVLDEADRMLDMGFEPEIKKILLDIRPDRQTIMTSATWPPGVQRMADKYLRDPIRINV
GSLDLQACHSVSQLVEFIEQHEKQDRVMDFISAMAPDDKLIIFVGRKVTADDISSNLAMK
GTNIGIQCIHGDRDQSDREQALEDMKTGAARVLIATDVASRGLDIKDLTHVLNYDFPRHI
EDYVHRIGRTGRAGRSGCALTFVTREDWMHVAKLIPIMEEAGQEVPEELIEMAERWKKTQ
DRRDEEKSAYGGSRGGGGNGCFKCGEEGHFSRECPKEKGRGGFRGGSRGGSRRGGSDELN
HGFQGTRGGRRKERDGITIGAWDAV
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgaagattgggatgaagaaatttcaactggcgtagttcctatcagggaaata
aaaagttttactttagaagaatctttttctaaacatcaaagtgatcataaaaatcaacct
gcttttcaaaatggctcaagttcatatcatggcagaagcagtgggaagatgcagagaggg
agaggaaattatgtagagaatagtttcagatctcatgaacattcaggtaatgtgaacagc
actccatctagacagctttcagattttaacaatcaaaaaccatcaaatggtttcgcaagt
cagggacatcaagataacatattggtaattgatgttagcaacgaattagtgggaaaagtt
attggaaaaggtggaataaaaatcagagaattgcaagatgtgtctggagcaagaataagg
ataaaccaaaatagtgcatcattgtcaaaaacccctatagaaataagtggcaccctcgcc
cagagagaaaaagctaaaaagttaattgaagatttaactattcaacctggtgacttgcaa
gcttgggcagataaatgtaatagagaatttgcagaatcacggctaacagctccaccagtt
ggaataaattggggtgaactaaagttacaggcagaagagtatgagattaaaaaatgggca
gactgtcctgatataataaagaagttttacaaggaacaaaatcatattgctaaaatgact
gaagaaaaagtcttagaaattagggagctgaagaacaaaatcactgtatcagacttaagc
aaaacaagtcgtaaaattccaaatcctgttcttacatttgatgatgctttttatgattac
ccggagatacttagcactattaaaagtaacaactttactgagccatctccaattcagtgt
caagcttggcctgttttactttctggtatggactgtattggaattgctcagactggaact
ggcaaaacattagcatttcttcttccagcatttattcatatagatggacaacctatacca
cgagataagcggggtggaccctcatgtttagtgctgtctcctaccagggagttagctcag
caaattgagatggaagtaaaaaagtttcattatcgtggaattcgaagtgtttgtatttat
ggaggtggagaccgtagtgcacaaattaatcttgttcgacagggtgttgaaattattata
ggaacaccaggaagattaaatgatttgttaatgaatggatttttttcggtcaaaagtgtc
acatatttagttcttgatgaagcagatagaatgttagatatgggctttgaacctgagata
aagaagattttattagacatcagaccagatcgacaaaccatcatgactagtgcaacttgg
ccgccgggtgtgcagagaatggctgacaaatatttacgagatccgatacgaataaatgtt
ggatctcttgatttacaagcctgtcatagtgtttctcagcttgttgaatttatagaacaa
catgagaagcaggatagggttatggactttataagtgctatggcacctgatgacaagctg
attatttttgtcggtcgaaaagtgacagctgatgatatttcttcaaaccttgccatgaaa
gggactaatattggaattcaatgtattcatggcgatagagatcagtctgatcgagaacag
gcacttgaagatatgaaaacaggcgctgctcgtgtcctgattgctacagatgtagcatct
agaggacttgatatcaaagatttaacccatgttttaaactatgactttccccgccacatt
gaagattatgttcatcgtattggtagaacaggtcgtgctggtcgatctggttgtgcccta
acatttgtcactcgcgaagattggatgcatgtagcaaaactcattcctatcatggaagaa
gccggacaagaagttcctgaagaacttatcgaaatggctgagcgatggaagaaaactcaa
gatagaagagacgaagagaaaagtgcatacggtggcagcagaggtggtggaggtaatggt
tgctttaaatgtggcgaagaaggtcatttttcaagagaatgtcctaaagagaagggtcga
ggtggctttagaggaggatcaagaggaggttctcgacgaggtggttcagatgaattaaat
catggttttcaaggtactcgaggtggtaggaggaaagagcgagatggaataactattgga
gcttgggatgccgtttga
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