Hydra vulgaris (swiftwater hydra): 100212139
Help
Entry
100212139 CDS
T01080
Name
(RefSeq) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hmg03016
]
100212139
Enzymes [BR:
hmg01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
100212139
Transfer RNA biogenesis [BR:
hmg03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
100212139
Prokaryotic type
100212139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
NAD_binding_6
Motif
Other DBs
NCBI-GeneID:
100212139
NCBI-ProteinID:
XP_012559772
UniProt:
A0A8B7DNL5
LinkDB
All DBs
Position
3:complement(24160717..24180680)
Genome browser
AA seq
437 aa
AA seq
DB search
MISMNNQSNKRSIPLDEFVGVVEPPEKKVNNCFKDNFEYIINNEKVDAEINKRILEDGEL
PDELEKTVTTKTNITEAKPNIVKEFKADFSRKRKVALLLAYCGANYSGMQKNPDVETIEE
KLLDALCEMKAIRAEHKHEFLVNNVNQISFQRAARTDKGVSAARQTVSLKLVASNTFLED
VNKLLPDDIRVFGLERVTKSFNAKCCCSGRAYEYLVPSFAFAPSNDVFSPSYRISDEQFA
KLNRLFSCYEGTHNFHNFTSGKPFSDQSANRYIISFKANKPFECQGHEFIAIEISGQSFM
IHQIRKMIGLVIAVCRGHCPEDTIEKSWLQAKADIPKAPGLGLLLCKVFYNHYNEKHCND
GLHKPITWSEQELEVERFKIEHIWYSIINEEIKKSPMVTWLKTLVNHTYTKVVMKSPMPS
DYKGKNGVFPEIEKVNS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcatgaataatcaatcaaataaaagatctattcctcttgatgaatttgttggt
gtagttgaacctcctgaaaaaaaagtaaataattgtttcaaagataattttgaatatata
ataaataatgaaaaagtagatgctgaaataaataaaagaattttggaggacggtgagcta
cctgatgaattagaaaagactgtcactactaaaaccaacattactgaagcaaagccaaat
attgtcaaagagttcaaagcagatttcagtagaaaaagaaaagttgcattattgttagca
tattgtggtgcaaattattcaggaatgcaaaaaaatcctgatgttgaaacaatagaagaa
aaactgttggatgctctttgcgagatgaaagccattcgtgctgaacacaaacatgagttt
cttgtaaacaatgtaaaccagataagcttccagcgagcagctcgtactgacaaaggtgta
tcagcagcacgtcaaactgtttctttaaagcttgtagcatcaaacacttttcttgaagat
gtgaataaactactgccggatgacattcgtgtttttggtttggaaagagttacaaaaagt
tttaatgcaaagtgttgttgttcaggccgtgcctatgaatatttagtaccttcatttgct
tttgctccatccaatgatgttttttctccatcatataggatttcagatgaacaatttgcg
aaattaaatcgactattttcatgttacgaaggaacgcataattttcataatttcacaagt
ggaaaacctttttcagatcaaagtgctaacagatacattattagtttcaaggcaaacaaa
ccatttgaatgtcagggtcacgagttcatagcaattgagatatctggtcaaagttttatg
attcatcaaattagaaagatgattgggcttgttattgcagtgtgtcgcggccactgtccc
gaagacactattgaaaaaagttggcttcaagcaaaagcagatattccgaaagctcctgga
ctaggtttattactttgtaaggtcttttataatcattacaacgaaaaacattgtaacgat
ggcttacataaaccaattacttggagcgaacaagagcttgaagtcgaacgctttaaaatt
gagcacatttggtatagcataattaacgaagaaataaaaaaatcgcctatggttacttgg
ttgaaaacactggttaatcatacgtacactaaagtggttatgaaatctccgatgccttct
gactataaaggcaagaatggtgttttccctgaaattgaaaaagtaaatagctag
DBGET
integrated database retrieval system
