Hydra vulgaris (swiftwater hydra): 100212454
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Entry
100212454 CDS
T01080
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100212454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100212454
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100212454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_EML_2
CSTF1_dimer
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
eIF2A
Beta-prop_NWD2_C
RMC1_N
Beta-prop_IFT140_2nd
Motif
Other DBs
NCBI-GeneID:
100212454
NCBI-ProteinID:
XP_002156244
UniProt:
T2ME31
LinkDB
All DBs
Position
8:15534578..15567679
Genome browser
AA seq
441 aa
AA seq
DB search
MSDVLKDRETLYKLIISQLRYDGLDLVASSLARCVGLEDLPLAPSSRLLELVKFGLLEEK
AGREPELDVVPGLTPRVQPEATGLDTNVKLGLDLEYERDEHGTSPPVSQYETHYVTAHKG
PVTSAAFTPDGRLCATGSVDTSIKIIDISRMLAKAAQSQSERQAERELDEGGGMKNHPVI
RTMYDHDLAINTIKFHPTSAVLVSGGEDRKVNLFDYTKSTVKKAYKSIQEVEAVREISIH
PCGDYLLVATDHPTVRLYDMNTMQCFVSSNPDDQHKAALTSVEYCPAANLFVTASADGAW
KLWDGVSNRCVQTYRDAHAGAEVQSVHFTRNSKFVLTSGRDSTAKLWELSTGRVINTYGG
AIIQSNNHAPAVFNYNEDFVLFPDDKNMSIGCWDSRTAEKLPSLPSGHNNSIRYLVHSSC
SPAFLSCSEDYRARFWYCRGS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgttttaaaagacagagagacattgtataaacttataataagtcaattgcga
tatgatgggctggatttggtggcttccagtttagctcgatgtgttggtctcgaggatttg
ccacttgcaccatcatctaggcttctagaattagttaagtttggtttacttgaagaaaaa
gcaggaagggagcctgagttggatgtagtaccaggtcttactcctagagtgcaaccagaa
gcaacaggacttgacaccaatgtaaaactggggcttgatttggagtatgaaagagatgaa
cacggaaccagccctcctgtcagtcagtatgaaacacattatgttactgcacataaaggt
ccggtgacttcagcagcatttactcctgatgggcgtttatgtgcaactggatctgttgac
acatcaataaaaattattgacatcagtcgcatgctagccaaagctgctcaatcacagtca
gaacgtcaagctgaaagagagctagatgaaggtggtggcatgaaaaatcatccagttatt
cgtacaatgtatgatcatgacttggcaatcaatactataaaattccatccaacatctgcg
gtgttagtatctggtggtgaagataggaaagtcaacctttttgattatactaaatctact
gtgaaaaaggcatataaaagtattcaagaagtggaagctgtacgagaaatatctattcat
ccttgtggtgattatctgcttgtagcaacagatcatcctacagttcgattatacgatatg
aacacaatgcagtgttttgtttcatcaaatcctgacgatcaacacaaagctgctctcact
tcggttgaatattgtcctgctgctaatttgtttgtaactgctagtgctgatggcgcttgg
aagctttgggacggtgtgagtaatcggtgtgtgcaaacgtacagagacgctcatgccggt
gctgaagtacaatccgtccatttcacaagaaattcaaaatttgttcttacttctgggaga
gattccactgctaagttgtgggagttatctactgggcgcgttattaatacgtatggtggt
gctataattcagagtaataatcacgctcctgctgttttcaactataatgaagattttgtt
ttgtttcctgacgataaaaacatgtcaatcggatgctgggatagcagaacagcagagaag
ttacctagtctaccatcgggtcataacaactcaattcgttacttagttcattcgtcttgc
tcacctgcatttttatcgtgtagcgaggattacagagccaggttctggtactgtcgagga
agttaa
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