Hydra vulgaris (swiftwater hydra): 100212671
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Entry
100212671 CDS
T01080
Symbol
LOC100212671
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 1 isoform X1
KO
K11984
U4/U6.U5 tri-snRNP-associated protein 1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100212671 (LOC100212671)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hmg03041
]
100212671 (LOC100212671)
04121 Ubiquitin system [BR:
hmg04121
]
100212671 (LOC100212671)
Spliceosome [BR:
hmg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
100212671 (LOC100212671)
Ubiquitin system [BR:
hmg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100212671 (LOC100212671)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SART-1
HIND
Motif
Other DBs
NCBI-GeneID:
100212671
NCBI-ProteinID:
XP_047137880
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All DBs
Position
06:44088645..44138228
Genome browser
AA seq
804 aa
AA seq
DB search
MGSGKKKDKKKKRKREYEYDEESSPRKNAKEDNDYNKYLSKNKETYKSRKKENSPPVPPG
MDWPYEAPKVSSYTRSPLSDGDTDWMAVDDRNRDRDYQNEVDRKYQSKLKDDIRKTESTT
ATSSQGDESLSIEETNKLRAKLGLKPLQIGSSSSTVEEKSYEDREDVHKPAGNISVQQSS
EKIRDKMEAIREKRKINQKLLKVRGIADDDDPVIDSAAAWVAKSRMLEKEKVMAEKRAQM
LEELDEEFGVSDIVEDVVGNKNKQSYTSKDLKGLKVEHKGKAFQDGEVVLTLKDKGILDE
DNEDVLMNINIQEEEKAKKNVYNRTHKPGYRAYDEVDDDTGLLKIKGVLDKYDDEINGTK
QESFRLDSSGIADLEGETGLEKIRNTLKAQQVSLESDALKLARDYFTEEEMIKFKKPKTK
VRKVVRKRQILKADDLLKLDLDSVKDRGSRKLKNSLKNSLNSNTEQDMEITPIIPDELDY
FVAVNQVVKEDEPIIDDDETEQELQLALERSRRSKVKKEKDPENGILERMATIIRKQPQP
ENEQSSASRSRKKNKGTIILDSTSEFCRTLGEIPTIGPQTSHNEVDENEDMELETTQVET
KGGWERVQSAENETKIDKKNDDIDDNVLEPEPLPSGMASTLRLANMKGYLKSGNEKVRKF
DPLNLPETKAEVDIEKLRDEEKAKYSRGGAYDRDRYDPYAFKEKTNYKPNVKLEYVDNKG
RELSQKEAFRLLSHKFHGKGSGKLKTEKRANKIKEEKKLQLMSSIDTPLNTAAMFKEKQK
ASQSPYIVLSGGGKNLLSGGSLKK
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgggatcaggaaaaaaaaaagataaaaaaaaaaagcgcaagcgagaatatgagtatgat
gaagaatcttctcctcggaaaaatgcaaaagaagataatgattacaataaatatttgtca
aaaaataaagaaacttataaatctagaaaaaaagaaaattccccccctgtccctcctggt
atggattggccttatgaagcaccaaaagtatctagttacacaagatctcctttaagtgat
ggtgatactgattggatggctgttgatgatcgaaatagagatagagattaccaaaatgaa
gttgatagaaaatatcaatcgaagttgaaggacgacattcgaaaaactgagtcaacaaca
gcaacttcttctcaaggtgacgagtctttaagtatagaagaaactaacaaactgagagca
aagcttggattaaaaccacttcaaatcggttcaagttcttcaacagtggaagagaagtca
tacgaagacagagaagatgtgcacaaacctgctggaaacattagtgtccaacaaagctca
gaaaagattcgtgataaaatggaagcaattcgagagaaacgcaagatcaatcaaaaacta
ctaaaggtgcgaggaatagctgatgatgatgatcctgttatcgatagtgctgctgcatgg
gtagctaaatctcgaatgttagaaaaagaaaaagtaatggctgaaaaaagggctcaaatg
ctggaagagctagatgaggaattcggagtgtctgatatagttgaagatgttgtaggcaat
aaaaacaagcaatcatatacatcaaaagatttaaaaggtcttaaagttgaacataaagga
aaggcattccaggatggggaagttgtacttactttaaaagataaaggaatcctagatgaa
gacaatgaagatgttttaatgaacatcaatattcaagaagaagaaaaggctaagaaaaat
gtttataatcgtacgcataaacctggttacagagcttatgatgaagtagacgatgacaca
ggattgttaaaaataaaaggtgtgcttgataaatatgacgatgaaataaatggaacaaag
caagagtcttttagactagattcatcaggaatagcagatttagaaggtgaaacaggttta
gagaaaattagaaatacgttaaaagcgcagcaggtatcactagaatctgatgctcttaaa
ttggcccgggactattttactgaagaagaaatgataaagttcaaaaagcctaaaacaaaa
gtacgcaaagttgttcgcaaaaggcaaatactgaaggctgatgatctacttaaactggat
ttggattcagtaaaagacagaggttcaaggaaattaaaaaactcattaaagaattcttta
aactcaaacactgagcaggacatggaaataaccccaataattccagatgaactagactat
tttgttgctgtaaatcaagttgtcaaagaagatgaacctatcattgatgatgatgaaaca
gaacaagagttacagttagctctagaaagatcaaggcgatctaaagttaaaaaagaaaaa
gatccagagaatggaatattagaaagaatggcgactattattcggaaacagcctcaacct
gaaaacgaacaatcttctgctagcagatctaggaagaaaaacaaaggcaccattatactt
gactctacctcggaattttgcagaacattgggtgaaataccaaccattggtccccaaact
tctcataatgaagtagatgaaaatgaagatatggagttagaaaccacgcaggtggaaact
aaaggtggctgggaacgtgttcagagtgctgaaaatgaaacaaagattgacaaaaaaaat
gatgatatagatgacaatgttttggaaccagagcctttaccatcaggaatggcgtcaaca
cttcgacttgcaaacatgaaaggttatttgaaaagtggaaatgaaaaagttcgtaaattt
gatccgttgaacttacctgaaaccaaagcagaagttgatattgaaaaattaagagatgaa
gaaaaagctaaatacagtcgtggaggagcctatgatagagataggtacgatccttatgcc
tttaaagagaaaaccaattacaaaccaaatgttaaactggagtatgttgataacaaaggc
agagaactatctcaaaaagaggcgtttcgtttattatcacacaaatttcatggtaaagga
tctggtaaacttaaaacagaaaagcgagcaaataaaataaaagaagaaaagaagttgcag
ctcatgagttcaattgatacacctcttaacactgctgccatgtttaaggagaaacaaaaa
gcttcacagtcaccttatattgttctcagtggtggaggcaaaaatcttttatcaggggga
agtttgaagaaatga
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