Hydra vulgaris (swiftwater hydra): 100212826 Help Entry 100212826         CDS       T01080                                  Name (RefSeq) collagen alpha-1(I) chain   KO K19719   collagen type II alpha Organism hmg  Hydra vulgaris (swiftwater hydra) Pathway hmg04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:hmg00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100212826  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:hmg00536]     100212826 Glycosaminoglycan binding proteins [BR:hmg00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100212826 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI DUF7076 Motif Other DBs NCBI-GeneID:  100212826 NCBI-ProteinID:  XP_047136630 LinkDB All DBs Position 7:complement(27891265..27914094) Genome browser AA seq 1425 aa AA seqDB search MRLAIPILVFLFVWVHAEKRVARQTQPNTIYLAGDKGSKGIKGDKGIFGDRGDRGPNGII GDKGEPGKNGRKGTRGEPGLMGPPGAGSAVGGLGSNKRPDPEAARVGIVGEFYGSATTFD YQPGPEGPQGQTGNIGEAGPKGNQGLVGLKGVIGLPGLLGEYGPRGEPGDPGVDGLKGAR GEPGIKGNPGKGGNIGHQGIQGNQGPFGFKGEEGSKGLQGDEGDQGRTGEKGYKGDKGDQ GEQGEMGFQGQMGIVGPDGPTGPVGPRGLDGARGSKGDDGPVGLKGSPGIRGAQGSKGQS GEQGERGAKGINGDAGPVGEDGSPGPKGFDGDQGKPGTPGAKGAIGDVGPQGLPGPQGQI GERGSQGIQGEIGTVGKRGDTGQQGPQGSIGPKGEVGDPGLQGAIGPSGKQGLEGKVGPT GPRGEVGAPGVQGPQGQPGVPGFPGQEGAKGNLGETGLTGPEGNKGEKGFKGSAGDRGLT GEPGTAGQPGATGRDGKTGPSGLHGKNGDTGLPGLPGMQGVAGSTGVVGMPGEMGDNGDL GAPGLQGPKGVQGATGATGEKGVSGPIGVPGRRGDTGAEGPQGSTGIQGPPGQPGAAGTD GKDGNPGDKGEQGKPGPTGNRGYPGIAGKIGATGTTGLQGPRGETGAPGAPGSSGDIGLV GPKGSSGNVGLPGMRGKQGSKGNTGSKGSQGKQGLKGAAGKDGAVGEMGPSGITGPPGPL GKRGEPGEDGAPGLPGLDGAQGPHGEDGQPGQPGQPGVQGLRGLPGEPGPRGPTGPVGDR GEPGESGPVGEDGAQGTAGALGESGSKGGTGEIGLPGPTGPQGLQGPNGEVGPVGQPGLV GRDGNAGQPGPRGIDGDPGNPGNPGASGDQGPPGHDGKDGERGKPGKEGDKGFVGTQGAV GMRGEQGPPGLQGRNGRPGQIGSKGFPGLNGKDGLNGKPGDKGFPGTDGMRGLQGIQGKD GTDGLPGKDGGKGEIGPMGYPGSQGVQGPMGEQGDIGEPGEPGILGQDGPKGSAGQQGNR GEDGKQGDKGESGVPGESGKQGEAGEAGERGSKGLTGNTGISGPPGDEGEKGDDGEQGLP GPIGPQGPRGSIGPDGPVGRNGSKGDVGHPGPAGSRGEPGIRGDVGNAGQPGLVGSEGPP GPQGEVFGLSGALAQFFASGGFGTKGPESSYQHDYNQYYQNYFQGYNQHQYYQGGKKSKV DEIIKRNIDGFDTMYRVFKTADKVFLGGDGTRDNPARSCLELFQWHLGANTGDYWIDPNE GSPDDSVLVHCNKLTNETCVYSKNTQISKNNYFKDNTDSYKWLMTEVANNFDYAMETPQM KILSLLSTTVRQTITFHCKNIPLLRGAKNTIKFKLDNGAIYHKKMRGVVLKVITDDCTVE NKWQKLVLELSTSKNEILPVIDLGVHGNGITSSEIGVDIGPACFS NT seq 4278 nt NT seq  +upstreamnt  +downstreamnt atgcgtttagcaattcctatactggttttcttatttgtatgggtacatgctgagaaaagg gtagctaggcagacacagccaaacacaatttatctagcgggagacaagggatctaaaggc ataaagggtgataagggtatatttggggatagaggagatcgtggtccaaatggaataata ggagataagggagaacctggaaaaaatgggcgtaaaggaactcgtggtgaaccagggtta atgggaccaccaggtgcaggaagtgcagtaggaggattagggtcaaataaaaggccagat cctgaagcagctcgtgttggtattgttggagaattttatggttctgcaacaacatttgat taccagcctggaccagaaggaccacaaggacaaactggaaatattggggaagctggacct aagggtaatcaaggtctagttggattaaaaggagttattggacttccaggtttattagga gaatatgggccaagaggtgaacctggagatcctggtgttgatggactgaagggtgcacgg ggtgaacctggcattaaggggaatcctggtaaaggtggaaatataggtcatcaaggtatt caaggtaatcaaggaccatttggtttcaaaggtgaagaggggtcaaaaggtttacaaggt gatgaaggtgaccaaggaaggactggagaaaagggatacaaaggtgacaagggggatcaa ggcgaacaaggagaaatgggatttcaaggacaaatgggaattgttggtccagacggacca actggtccagttggtccccgtggtcttgatggtgctagaggaagtaaaggtgatgatggc ccagtaggtcttaaaggctcccccggtatacgtggagcacaaggaagcaaaggtcagtct ggtgaacagggagagcgtggtgcaaaaggaattaatggagatgctggtccagttggtgaa gatggctctcctggaccaaaaggttttgatggagatcagggtaaacctggtaccccaggt gcaaaaggagctataggagatgtaggacctcaaggtctacctggacctcaagggcagata ggggagcgtggtagtcaaggaattcaaggagagattggtactgtaggaaaaagaggagat acagggcaacagggacctcaaggaagtattggtccaaaaggtgaagtaggtgatcccgga ctgcaaggagcaattggtccttcaggtaaacaaggtttagaaggtaaagttggtccaact ggtccaagaggagaagttggagctcctggtgtacaaggtccacagggacaacctggagta ccaggatttcctgggcaagaaggagcaaaaggtaaccttggagaaacaggtttaactggc cctgaaggcaataaaggtgaaaaaggttttaaaggttcagcaggagatagaggattaaca ggagagccaggcactgctggtcaacctggagcaactgggcgtgatggaaaaactgggcca tctggactccatggtaaaaatggagatactggtctaccaggattgcctggtatgcaaggt gtagccggtagtactggagtagttggaatgccaggagaaatgggtgataatggagatttg ggagcacctggtttgcaaggacctaaaggagtgcagggtgcaactggtgctacaggagaa aaaggagtttcaggacctattggagttccaggtagacgtggtgacactggagctgaaggc ccacaaggatcaacaggaatacagggacctcctggccaacctggagcagcaggaacagat ggcaaagatggaaaccctggagacaaaggagaacagggaaaacctggacctactggaaat cgaggttatccaggcattgctggaaaaattggtgcaactggtactactggattacaaggg ccaagaggggaaactggtgcacctggagctcctggaagttctggagatattggtctagtt ggaccaaagggatcatcaggcaatgttggattgcccggaatgagaggaaaacaaggtagt aagggaaatacaggatcaaaaggtagccaaggcaaacaaggattaaagggagctgctgga aaagatggtgcagttggagaaatgggaccatctggaataacaggaccacctggtccctta ggtaaaagaggagaacctggagaagatggagcaccaggtttacctggattagatggagct caaggacctcatggtgaagatggtcaaccagggcagccagggcaacctggtgtgcaaggg ctacgtggtttaccaggagagcctgggccaagaggtccaacaggtccagtaggtgatcgt ggtgagccaggagaaagtggtccagttggtgaggatggagctcagggaacagctggagca ttaggagaatctggttctaaaggaggaactggtgaaattggtttgcctggccctacaggg ccacaaggattgcaaggtccaaatggtgaagtaggtcctgtaggacaacctgggttagta ggaagagatggaaatgctggtcaaccaggaccaaggggaattgatggtgatcctggaaat cctggaaatcctggagcaagtggcgaccaaggccctccaggacatgatggaaaagatggt gaaagaggaaaaccaggaaaagagggtgataaaggttttgttggaactcaaggagctgtt ggcatgagaggagaacaaggtcctcctggtttacaagggagaaatggtagacctggacag attggatcaaaaggttttcctggcctaaatggtaaagatggtttaaatggaaagcctggt gataaaggtttccctggtactgatggaatgagaggattacaagggattcaaggaaaagat ggcactgatggattacctggaaaagatggaggaaaaggtgagataggtcccatgggctat ccaggaagtcaaggagtgcaaggtccaatgggtgaacaaggagatattggtgagcccgga gaacctggtatattaggacaagatggaccaaaaggttcagcaggacaacaaggaaatcgt ggagaagatggaaaacaaggagataaaggggaatcaggagtaccgggagaaagtggcaag caaggagaagcaggcgaagctggtgagcgtggtagtaaaggtttaacaggaaatactggt atatctggcccaccaggtgatgagggtgaaaaaggtgatgatggcgaacaaggtttgcct ggacccataggacctcaaggaccccgtggttcaataggtccagacggccctgttggacgg aatggatcaaaaggtgatgttggacatcctggacctgcaggtagtcgaggagaacctgga atacgtggagatgttggaaatgcaggtcagcctggtttagttggaagtgagggacctcct ggaccacaaggagaagtatttggtctttctggtgcacttgcccaattctttgcatctgga ggttttggaactaaaggaccagaaagttcctaccaacatgactataaccaatactatcaa aactactttcaaggttacaaccaacaccagtactaccaaggtggcaagaaatccaaagta gatgaaatcattaaacgaaatattgatggatttgataccatgtatagagtttttaaaaca gccgacaaagtatttttgggaggcgatggaactagagacaatccggctagatcctgttta gaattattccaatggcatttaggggctaatactggtgactattggatagatcctaatgaa ggctcacctgatgattctgttttagtgcattgcaataaattgactaatgaaacatgcgtg tattctaaaaatactcagatttctaagaacaactactttaaggataacactgacagctat aaatggcttatgacagaagttgctaataattttgattatgcaatggaaacacctcaaatg aaaattctaagtttgctttcaactaccgttcgacaaacaataacttttcactgtaagaac attcctcttctgcgtggagctaaaaatactatcaaattcaagttggataatggcgcaatt tatcataagaaaatgagaggagttgttttaaaagttattaccgatgattgcacggttgaa aataaatggcagaagttagtgctggaactttctacatctaaaaacgaaattttacccgtt attgatttgggggttcatggtaatggcataacatcatcagaaatcggtgttgatattgga ccagcttgcttctcataa

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