Hydra vulgaris (swiftwater hydra): 100213291
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Entry
100213291 CDS
T01080
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03022
Basal transcription factors
hmg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100213291
09124 Replication and repair
03420 Nucleotide excision repair
100213291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100213291
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100213291
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100213291
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100213291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
DUF4473
Motif
Other DBs
NCBI-GeneID:
100213291
NCBI-ProteinID:
XP_012553893
UniProt:
T2MGP2
LinkDB
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Position
6:complement(41804870..41834270)
Genome browser
AA seq
522 aa
AA seq
DB search
MSEKTVACIANTVRYKKIDGTLSLLSNKITWSATNGVGKNFQCLYSEIKMQRISPESSSK
VQLQIVLHTESSYNFQFVNPKGRAAQLKNRNEIKDLLAELIPAHREKANKDLEEKNKLLK
ENSDLYQLYKDLVVTGIITAEEFWENQKSVNTMACSSASSEKQKVGIASGLLAELKPDMH
GCNELRFNLTADSIDAIFKMYPAVKKKYVASVPDEMSEKEFWTEFFQSQHFHRDRIPKNN
QSNKDTFGELAKKDEQESFKKFVTDFYDPLIDFSSTCPITEEGYGTSEVKRHSSHDTLIK
HFNHQSFMILQEGNNRVLTEKNADTDRKRKRIREAVELDELENHSQEFVSTLKIVDTDKF
FHGQEAVYENGNKPCSKMFIQSILTWKPDLGNVLSAKPALSAMTNVSPGGKYMLISAQNS
TFVDNISLQLYQETRKHYLSLAELLRHFWSCFPIKTAQLEEKVQRMASSLEKFRQTKLLN
FSTTLSPQNTQLIDHMNDMISTALKKFITWEEKRTSTKISRT
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaagacagttgcatgtattgcaaatacagtaaggtacaaaaaaattgatggt
acacttagtcttttgtcaaacaaaattacatggagtgcaacaaatggtgttggtaaaaac
ttccaatgcttgtattcagagataaaaatgcaaagaataagtcctgaatcaagttcaaaa
gtacagcttcaaattgtacttcatacagaatcttcatacaattttcaatttgtgaatcca
aaaggcagagcagcacaattaaagaatcgaaatgaaataaaagatcttttagcagagcta
attcctgctcatcgagaaaaagcaaataaagatcttgaagagaaaaataagttgctcaaa
gaaaatagtgacttgtaccagttgtataaagacttagttgtaacagggattataactgct
gaagaattttgggaaaatcagaaatcagtcaacacaatggcatgttcttctgcttcctct
gaaaaacaaaaggttggcatagcatcaggtttactggcagaactaaaacctgatatgcat
ggttgcaatgagttaaggttcaatttgactgcagacagcattgatgccatattcaaaatg
tatccagcagttaaaaagaagtatgttgcctctgtacctgacgaaatgagtgaaaaagag
ttttggacagaattttttcaatctcagcactttcatcgagaccgaatacccaaaaataac
caatcaaataaagacacttttggagaattagcaaagaaagatgaacaagaatcttttaag
aagtttgttacagacttttatgaccctttaattgatttctcttctacatgtccaattaca
gaggaggggtatgggactagcgaagttaaaagacattcatcacacgatactctaattaag
catttcaatcatcaaagttttatgatacttcaagaaggtaacaatagggtgttaacagaa
aaaaatgctgacactgatagaaaaagaaaacgaattcgtgaagctgttgaactggatgag
ttagagaatcactcccaagagtttgtttcaacattaaaaattgtagatacagataaattt
tttcacggtcaagaagcagtttatgagaatggaaacaaaccttgctctaagatgtttata
caaagtatattgacatggaaacctgatcttggaaatgtactttctgcaaaacctgctcta
tctgctatgactaatgtttctccgggtggaaagtatatgctgatatctgctcaaaacagt
acttttgttgataatatctccttgcaattataccaagagacgcgtaaacattatctttcc
ttagctgagttgttaaggcatttctggtcttgttttcccataaaaacggcacagttagag
gaaaaggttcaacgaatggcttctagtttggagaaattcagacagacaaaattattaaac
ttttcaactacactgtcaccgcaaaatacacaactaattgatcatatgaatgacatgata
tcaactgctttgaaaaagttcattacttgggaagaaaaacgcacttcgacaaaaattagc
agaacgtag
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